[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,787 items for (author: lv & nn)

EMDB-77155:
VIPR Binary Complex - Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77156:
VIPR Binary Complex with one filament
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77157:
VIPR Binary Complex with two filaments
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77176:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77183:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77184:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77185:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77731:
VIPR Ternary Complex with an ssDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77732:
VIPR Ternary Complex with an ssDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77733:
P. fulva VIPR Ternary Complex with four subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77734:
VIPR Ternary Complex with an ssDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77735:
VIPR Ternary Complex with a duplex dsDNA substrate, 5 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77736:
VIPR Ternary Complex with a duplex dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77738:
VIPR Ternary Complex with a duplex dsDNA substrate, 7 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77739:
VIPR Ternary Complex with a duplex dsDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77740:
VIPR Ternary Complex with a duplex dsDNA substrate, 9 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77742:
VIPR Ternary Complex with a duplex dsDNA substrate, 8 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77745:
P. fulva VIPR Ternary Complex Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35se:
VIPR Binary Complex - Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sf:
VIPR Binary Complex with one filament
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sg:
VIPR Binary Complex with two filaments
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35sy:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tr:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tw:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-35tx:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pb:
VIPR Ternary Complex with an ssDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pc:
VIPR Ternary Complex with an ssDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pd:
P. fulva VIPR Ternary Complex with four subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pe:
VIPR Ternary Complex with an ssDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pf:
VIPR Ternary Complex with a duplex dsDNA substrate, 5 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pg:
VIPR Ternary Complex with a duplex dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pj:
VIPR Ternary Complex with a duplex dsDNA substrate, 7 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pk:
VIPR Ternary Complex with a duplex dsDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pm:
VIPR Ternary Complex with a duplex dsDNA substrate, 9 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36po:
VIPR Ternary Complex with a duplex dsDNA substrate, 8 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

PDB-36pr:
P. fulva VIPR Ternary Complex Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-76887:
Septin tetrameric complex from Caenorhabditis elegans by Cryo-EM
Method: single particle / : Saladino GCR, Ciol H, Mendonca DC, Furtado AA, Pereira HM, Klaholz B, Araujo APU, Garratt RC

PDB-12zn:
Septin tetrameric complex from Caenorhabditis elegans by Cryo-EM
Method: single particle / : Saladino GCR, Ciol H, Mendonca DC, Furtado AA, Pereira HM, Klaholz B, Araujo APU, Garratt RC

EMDB-72759:
Structure of Measles virus fusion protein in pre-fusion in complex with neutralizing Fabs MeV-15 and MeV-104
Method: single particle / : Binshtein E, Crowe JE

PDB-9yby:
Structure of Measles virus fusion protein in pre-fusion in complex with neutralizing Fabs MeV-15 and MeV-104
Method: single particle / : Binshtein E, Crowe JE

EMDB-65978:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

EMDB-65979:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the post-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

PDB-9whx:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

PDB-9why:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the post-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

EMDB-54890:
Consensus map of ternary PROTAC-mediated complex consisting of Cereblon, DDB1 and BRD4-BD1, non-covalently linked by JQ1-AcN
Method: single particle / : Fischer G, Peter D, Arce-Solano S, Kessler D

EMDB-54891:
Focussed map of ternary PROTAC-mediated complex consisting of Cereblon, DDB1 and BRD4-BD1, non-covalently linked by JQ1-AcN
Method: single particle / : Fischer G, Peter D, Arce-Solano S, Kessler D

EMDB-55789:
Structure of vaccine candidate AHSV-4 VP2 DI-mi3 nanoparticle
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

EMDB-55790:
African Horse Sickness Virus serotype 4 VP2 homotrimer
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

PDB-9tcc:
African Horse Sickness Virus serotype 4 VP2 homotrimer
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

EMDB-46409:
CryoEM structure of BoNT/E at pH5, class 1
Method: single particle / : Gao L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more