[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 13,043 items for (author: lu & r)

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

PDB-9qgy:
Structure of the YbjP lipoprotein bound to the MacAB-TolC tripartite efflux pump
Method: single particle / : Kaplan E, Horne J, Luisi BF

EMDB-53029:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdl:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-75697:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hn:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-74146:
Cryo-EM Structure of Human STAT2-USP18-ISG15 Complex
Method: single particle / : Huynh KW, Yamaguchi M

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-73884:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

EMDB-74737:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

EMDB-74738:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

EMDB-74739:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

EMDB-74740:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-75193:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-A epitope)
Method: single particle / : Park S, Ward AB

EMDB-75194:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-B epitope)
Method: single particle / : Park S, Ward AB

EMDB-75295:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-10mu:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-9z80:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

PDB-9zt5:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

PDB-9zt6:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

PDB-9zt7:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

PDB-9zt8:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-55338:
Apoferritin from equine spleen, recovered from the synchrotron with 1 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-55343:
Apoferritin from equine spleen, recovered from the synchrotron with 0 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-55344:
Apoferritin from equine spleen, recovered from the synchrotron with 100 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-66617:
Cryo-EM structure of the type I pilus from Escherichia Coli and the surrounding water network
Method: helical / : Petrova TE, Glukhov AS, Stetsenko A, Guskov A, Gabdulkhakov AG

PDB-9x67:
Cryo-EM structure of the type I pilus from Escherichia Coli and the surrounding water network
Method: helical / : Petrova TE, Glukhov AS, Stetsenko A, Guskov A, Gabdulkhakov AG

EMDB-75195:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-75196:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ij:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ik:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

PDB-9l3i:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

PDB-9l3q:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-55635:
The Traptamer with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-53529:
Cytochrome bd II oxidase qOR-2 type from Mycobacterium smegmatis
Method: single particle / : Kovalova T, Janczak M, Adelroth P, Hogbom M

PDB-9r2g:
Cytochrome bd II oxidase qOR-2 type from Mycobacterium smegmatis
Method: single particle / : Kovalova T, Janczak M, Adelroth P, Hogbom M

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3v:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3w:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3y:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more