[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 432 items for (author: liu & hl)

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-64837:
the open state of NAL1 from indica with R233H
Method: single particle / : Liu HL, Zhang SJ, Liu CM

EMDB-64838:
Narrow leaf 1 (NAL1) mutant carrying R233H from India
Method: single particle / : Zhang SJ, Liu HL, Liu CM

EMDB-56664:
Cryo-ET of IAV (WSN-M1-Udorn) supernatant
Method: electron tomography / : Peterl S, Chlanda P

EMDB-56667:
Cryo-ET of IAV (WSN-M1-Udorn) pellet
Method: electron tomography / : Peterl S, Chlanda P

EMDB-56668:
Cryo-ET of IAV (WSN-M1-Udorn) unfractionated
Method: electron tomography / : Peterl S, Chlanda P

EMDB-64402:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64403:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-76230:
Structure of TMEM106B doublet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-76248:
Structure of TMEM106B singlet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-72976:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

PDB-9yi2:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-60263:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

PDB-8zmz:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

EMDB-72160:
Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Method: single particle / : Zhu J, Pagarigan BE, Tran ET

EMDB-45885:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-48826:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49380:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49522:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Method: single particle / : Khan YA, Brunger AT

EMDB-49524:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Method: single particle / : Khan YA, Brunger AT

EMDB-49526:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Method: single particle / : Khan YA, Brunger AT

EMDB-49527:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 8
Method: single particle / : Khan YA, Brunger AT

EMDB-49528:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - All Merge (Class 9, focused on D1/D2)
Method: single particle / : Khan YA, Brunger AT

EMDB-49801:
Y20S after Mg2+ (Sec18) - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49802:
Y20S after Mg2+ (Sec18) - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-49824:
Y20S after Mg2+ (Sec18) - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49825:
Sec18 Mg2+ class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49826:
Sec18 Mg2+ class 1
Method: single particle / : Khan YA, Brunger AT

EMDB-49831:
NSF Mg2+ class 1 heptamer
Method: single particle / : Khan YA, Brunger AT

EMDB-49833:
NSF Mg2+ class 2 hexamer
Method: single particle / : Khan YA, Brunger AT

EMDB-70472:
Y20S hydrolyzing Class 1
Method: single particle / : Khan YA, Brunger AT

PDB-9crx:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3
Method: single particle / : Khan YA, Brunger AT

PDB-9n22:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 2
Method: single particle / : Khan YA, Brunger AT

PDB-9ng2:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Method: single particle / : Khan YA, Brunger AT

PDB-9nlu:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Method: single particle / : Khan YA, Brunger AT

PDB-9nlw:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Method: single particle / : Khan YA, Brunger AT

PDB-9nly:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Method: single particle / : Khan YA, Brunger AT

PDB-9nlz:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 8
Method: single particle / : Khan YA, Brunger AT

PDB-9nm1:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - All Merge (Class 9, focused on D1/D2)
Method: single particle / : Khan YA, Brunger AT

PDB-9nud:
Y20S after Mg2+ (Sec18) - Class 2
Method: single particle / : Khan YA, Brunger AT

PDB-9nue:
Y20S after Mg2+ (Sec18) - Class 3
Method: single particle / : Khan YA, Brunger AT

PDB-9nuz:
Y20S after Mg2+ (Sec18) - Class 4
Method: single particle / : Khan YA, Brunger AT

PDB-9nv0:
Sec18 Mg2+ class 2
Method: single particle / : Khan YA, Brunger AT

PDB-9nv1:
Sec18 Mg2+ class 1
Method: single particle / : Khan YA, Brunger AT

PDB-9nv9:
NSF Mg2+ class 1 heptamer
Method: single particle / : Khan YA, Brunger AT

PDB-9nvd:
NSF Mg2+ class 2 hexamer
Method: single particle / : Khan YA, Brunger AT

EMDB-45883:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 1
Method: single particle / : Khan YA, Brunger AT

PDB-9cru:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 1
Method: single particle / : Khan YA, Brunger AT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more