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Showing 1 - 50 of 5,007 items for (author: li & cl)

EMDB-72238:
Rad55-Rad57-SHU-Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-55116:
Symmetry relaxed reconstruction of Rhodospirillum rubrum encapsulin:encapsulated ferritin nanocompartment
Method: single particle / : McIver Z, McCorvie TJ, Basle A, Marles-Wright J

EMDB-59321:
Single particle reconstruction of Rhodospirillum rubrum encapsulated ferritin in encapsulin nano compartment
Method: single particle / : Marles-Wright J, McIver Z, Ross J, McCorvie T, Basle A

PDB-33bf:
Single particle reconstruction of Rhodospirillum rubrum encapsulated ferritin in encapsulin nano compartment
Method: single particle / : Marles-Wright J, McIver Z, Ross J, McCorvie T, Basle A

PDB-9sqr:
Symmetry relaxed reconstruction of Rhodospirillum rubrum encapsulin:encapsulated ferritin nanocompartment
Method: single particle / : McIver Z, McCorvie TJ, Basle A, Marles-Wright J

EMDB-72226:
Rad55-Rad57-SHU bound to ssDNA with AMP-PNP. Local map focused on 55/57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72228:
Rad55-Rad57-SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72229:
Rad55-Rad57-SHU - Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72237:
Rad55-Rad57-SHU-Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72241:
"Rad55-Rad57-SHU-Rad51 - Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72268:
Rad55-Rad57-SHU homologous recombination complex. Local refinement on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72269:
Rad55-Rad57-SHU homologous recombination complex. Local refinement on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-66671:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

PDB-9x9t:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

EMDB-54981:
GABA-A a4b3d receptor in complex with GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

EMDB-54987:
GABA-A a4b3d receptor in complex with DS2-Me, GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

EMDB-55007:
GABA-A a4b3d receptor in complex with GABA and Nb24
Method: single particle / : Nestorow S, Miller PS

EMDB-59342:
Cryo-EM structure of MAGE-A4 (230-239)-bound HLA-A*02:01 in complex with Fab VR-6
Method: single particle / : Schuster S, Weng TH, Reinhart C, Michel H, Birkenfeld J

EMDB-59343:
Cryo-EM structure of MAGE-A4 (230-239)-bound HLA-A*02:01 in complex with Fab VR-4
Method: single particle / : Schuster S, Weng TH, Reinhart C, Michel H, Birkenfeld J

EMDB-59344:
Cryo-EM structure of MAGE-A4 (230-239)-bound HLA-A*02:01 in complex with Fab VR-58
Method: single particle / : Schuster S, Weng TH, Reinhart C, Michel H, Birkenfeld J

EMDB-73688:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

EMDB-49696:
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
Method: subtomogram averaging / : Upadhye VV, Dick RA

PDB-9nqy:
Nipah Virus Matrix Lattice in Complex with Human Cell Membrane
Method: subtomogram averaging / : Upadhye VV, Dick RA

EMDB-72163:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

PDB-9q2f:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-54707:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

PDB-9saz:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

EMDB-52665:
Cryo-EM structure of human IL-36gamma in complex with the IL-36R and IL-1RAcP ectodomains
Method: single particle / : Andries J, Felix J, Clancy DM, Savvides SN

PDB-9i7x:
Cryo-EM structure of human IL-36gamma in complex with the IL-36R and IL-1RAcP ectodomains
Method: single particle / : Andries J, Felix J, Clancy DM, Savvides SN

EMDB-55134:
P. abyssi hibernation factor Hib bound to ATP (Hib-PTC conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55140:
Cryo-EM structure of the N-terminal domain of Hib bound to the L1 stalk of Pyrococcus abyssi 70S
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sr9:
P. abyssi hibernation factor Hib bound to ATP (Hib-PTC conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9srf:
Cryo-EM structure of the N-terminal domain of Hib bound to the L1 stalk of Pyrococcus abyssi 70S
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-82115:
In Situ Subtomogram Average of the 80S Ribosome in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82118:
In Situ Subtomogram Average of the 60S Ribosomal Subunit in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82119:
In Situ Subtomogram Average of the Free 60S Ribosomal Subunit in the Soma of Rat Hippocampal Neuron
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82120:
In Situ Subtomogram Average of the 80S Ribosome in the Soma of Rat Hippocampal Neurons
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72246:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72247:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72249:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72252:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72253:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72254:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72259:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72261:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

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