[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: kumar & yd)

EMDB-74033:
1-methyl-pseudouridine twist corrected RNA origami 6-helix bundle type-1 dimer
Method: single particle / : McRae EKS, Kumar YD

EMDB-44199:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44247:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b54:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b65:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-51640:
Subtomogram average of immature Langat virus from cryo-electron tomograms of infected cells
Method: subtomogram averaging / : Carlson LA, Dahmane S

EMDB-51642:
Subtomogram average of mature Langat virus
Method: subtomogram averaging / : Carlson LA, Dahmane S

EMDB-18778:
Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Method: single particle / : Wapenaar H, Wilson MD

EMDB-18793:
Cryo-EM density map of DNMT3A1-DNMT3L on a human H2AKc119ub nucleosome at 5.1 A resolution
Method: single particle / : Wapenaar H, Wilson MD

PDB-8qzm:
Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Method: single particle / : Burdett H, Wapenaar H, Wilson MD

EMDB-42074:
Representative tomogram of Enterococcus faecium WT Com15
Method: electron tomography / : Hang HC, Park D

EMDB-42086:
Representative tomogram of Enterococcus faecium SagA complementation strain
Method: electron tomography / : Hang HC, Park D

EMDB-42087:
Representative tomogram of Enterococcus faecium SagA deletion strain
Method: electron tomography / : Hang HC, Park D

EMDB-16859:
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)
Method: single particle / : Foglizzo M, Burdett H, Wilson MD, Zeqiraj E

EMDB-16869:
Low-resolution structure of BRCA1dExon11-FL BARD1 (closed state)
Method: single particle / : Foglizzo M, Zeqiraj E

EMDB-16870:
Low-resolution structure of BRCA1dExon11-FL BARD1 (open state)
Method: single particle / : Foglizzo M, Zeqiraj E

EMDB-17928:
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map 2)
Method: single particle / : Foglizzo M, Burdett H, Wilson MD, Zeqiraj E

PDB-8off:
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)
Method: single particle / : Foglizzo M, Burdett H, Wilson MD, Zeqiraj E

EMDB-8078:
BG505 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235.12 wk323 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-8079:
B41 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235.12 wk323 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-8080:
B41 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235.9 wk152 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-8081:
BG505 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235.9 wk152 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-8082:
BG505 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235 wk41 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-8083:
B41 SOSIP.664 HIV-1 Env trimer in complex with anti-HIV CH235 wk41 Fab
Method: single particle / : Ozorowski G, Ward AB

PDB-3izh:
Mm-cpn D386A with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izi:
Mm-cpn rls with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izj:
Mm-cpn rls with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izk:
Mm-cpn rls deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izl:
Mm-cpn rls deltalid with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izm:
Mm-cpn wildtype with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izn:
Mm-cpn deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5244:
Mm-cpn D386A with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5245:
Mm-cpn rls with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5246:
Mm-cpn rls with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5247:
Mm-cpn rls deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5248:
Mm-cpn rls deltalid with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5249:
Mm-cpn wildtype with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5250:
Mm-cpn deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3iyg:
Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

PDB-3ktt:
Atomic model of bovine TRiC CCT2(beta) subunit derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

EMDB-5145:
4.7 Angstrom asymmetric cryo-EM map of TRiC in the both-ring closed ATP-AlFx state
Method: single particle / : Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W

EMDB-5148:
4.0 Angstrom two-fold imposed cryo-EM map of TRiC in the both-ring closed ATP-AlFx state
Method: single particle / : Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more