[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 92 items for (author: koga & h)

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-37128:
Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Koyasu T, Mayanagi K, Yokogawa T, Adachi N, Nakamura T, Senda T, Kakuta Y

EMDB-37129:
Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Adachi N, Yokogawa T, Koyasu T, Mayanagi K, Nakamura T, Senda T, Kakuta Y

PDB-8kd9:
Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Koyasu T, Mayanagi K, Yokogawa T, Adachi N, Nakamura T, Senda T, Kakuta Y

PDB-8kda:
Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Method: single particle / : Teramoto T, Adachi N, Yokogawa T, Koyasu T, Mayanagi K, Nakamura T, Senda T, Kakuta Y

EMDB-14957:
Non-muscle F-actin decorated with non-muscle tropomyosin 1.6
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

EMDB-14958:
Non-muscle F-actin decorated with non-muscle tropomyosin 3.2
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

PDB-7ztc:
Non-muscle F-actin decorated with non-muscle tropomyosin 1.6
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

PDB-7ztd:
Non-muscle F-actin decorated with non-muscle tropomyosin 3.2
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

EMDB-13234:
Mycoplasma pneumoniae 70S ribosome in untreated cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13272:
70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13273:
70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13274:
70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13275:
70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13276:
70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13277:
70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13278:
70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13279:
70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13280:
70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13281:
70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13282:
70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13283:
70S ribosome class with unexplained density near P site in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13284:
70S ribosome with dim 30S subunit in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13285:
free 50S in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13286:
free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13287:
polysome, ribosome pair (conformation 1) in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13288:
polysome, ribosome pair (conformation 2) in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13289:
polysome, ribosome pair (conformation 3) in Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13410:
70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13411:
70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13412:
70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13413:
70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S

EMDB-13414:
70S ribosome with dim 30S subunit in chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13431:
free 50S in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13432:
70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13433:
70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13434:
70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13435:
70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13436:
70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13445:
70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13446:
70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13447:
70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13448:
70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13449:
70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13450:
70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13451:
70S ribosome with dim 30S subunit in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

EMDB-13452:
free 50S in pseudouridimycin-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

PDB-7ooc:
Mycoplasma pneumoniae 30S subunit of ribosomes in chloramphenicol-treated cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

PDB-7ood:
Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
Method: subtomogram averaging / : Xue L, Lenz S, Rappsilber J, Mahamid J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more