[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 18,310 items for (author: ko & a)

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-56368:
Escherichia coli ribosome arrested on a chimeric, 110-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56453:
Escherichia coli ribosome arrested on a chimeric, 130-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56462:
Escherichia coli ribosome arrested on a chimeric, 190-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-55856:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55857:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55858:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55859:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55866:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55867:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55868:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-55869:
Roseiflexus castenholzii cells with contractile injection systems.
Method: electron tomography / : Gaisin AV

EMDB-54985:
Subtomogram average of nucleosomes extracted from vitreous sections of Drosophila melanogaster embryos
Method: subtomogram averaging / : Fatmaoui F, Iusupova A, Grewe D, Taiki F, Leforestier A, Eltsov M

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-63977:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

PDB-9ua3:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-52784:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb11
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

EMDB-52785:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb4
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

EMDB-72148:
DX2-CX3-RAD51 structure in the intermediate state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72150:
DX2-CX3-RAD51 in the closed state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72152:
DX2-CX3-RAD51 in the active state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72153:
DX2-CX3 structure capping RAD51 filament
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72154:
BCDX2-CX3-RAD51-RAD51-ssDNA supercomplex
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q23:
DX2-CX3-RAD51 structure in the intermediate state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q25:
DX2-CX3-RAD51 in the closed state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q28:
DX2-CX3-RAD51 in the active state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q29:
DX2-CX3 structure capping RAD51 filament
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q2a:
BCDX2-CX3-RAD51-RAD51-ssDNA supercomplex
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72305:
Pointed end of Cofilin-2 Bound F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72306:
Barbed End of Cofilin-2 F-actin, B0 and B-1 Unoccupied
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72307:
Barbed End of Cofilin-2 F-actin, B-1 Occupied
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72308:
Barbed End of Cofilin-2 F-actin, Terminal Actins Occupied with Cofilin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72313:
One CAP-1 Bound to the Pointed End of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72330:
Two CAP-1 Bound to the Pointed End of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72506:
One CAP-1 Bound to the Pointed End of Cofilin F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72703:
Two CAP-1 Bound to the Pointed End of Cofilin F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72707:
CP at the barbed end with one cofilin on second-to-last subunit
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72711:
Capping protein bound to the barbed end of cofilactin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72712:
Cofilactin filament
Method: helical / : Palmer NJ, Dominguez R

EMDB-72998:
Capping protein bound to the barbed end of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-53529:
Cytochrome bd II oxidase qOR-2 type from Mycobacterium smegmatis
Method: single particle / : Kovalova T, Janczak M, Adelroth P, Hogbom M

PDB-9r2g:
Cytochrome bd II oxidase qOR-2 type from Mycobacterium smegmatis
Method: single particle / : Kovalova T, Janczak M, Adelroth P, Hogbom M

EMDB-65918:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more