[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 19,879 items for (author: ko & a)


EMDB Unreleased entry

EMDB-54410:
Icosahedral reconstruction of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT


EMDB Unreleased entry

EMDB-54411:
Chikungunya virus-like particle trimer 1
Method: single particle / : Song X, Kim YC, Huiskonen JT


EMDB Unreleased entry

EMDB-54412:
Chikungunya virus-like particle trimer 2
Method: single particle / : Song X, Kim YC, Huiskonen JT


EMDB Unreleased entry

EMDB-54413:
Composite density map of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT


EMDB Unreleased entry

EMDB-52707:
Dark-state structure of human medium-wavelength cone opsin (OPN1MW)
Method: single particle / : Schmidt SL, Isaikina P


EMDB Unreleased entry

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G


EMDB Unreleased entry

EMDB-67574:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

PDB-21co:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M


EMDB Unreleased entry

EMDB-76165:
Nipah virus fusion protein with 20G7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P


EMDB Unreleased entry

EMDB-76168:
Nipah virus fusion protein ectodomain in complex with 8C7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P


EMDB Unreleased entry

EMDB-76170:
Hendra virus fusion protein ectodomain in complex with 9A9 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P


EMDB Unreleased entry

EMDB-77092:
Characterization standard for in-situ cryo-electron tomography: structure of PP7 virus-like-particle in E. coli from plunge freezing by single particle analysis
Method: single particle / : Kopylov M, Ali M, Montabana EA, Paraan M


EMDB Unreleased entry

EMDB-76298:
Gelsolin domain G2 transitionally bound to F-actin
Method: single particle / : Saks AJ, Dominguez R


EMDB Unreleased entry

EMDB-76299:
Gelsolin domain G2G3 transitionally bound to F-actin
Method: single particle / : Saks AJ, Dominguez R


EMDB Unreleased entry

EMDB-76300:
Gelsolin domain G2G3 fully bound to F-actin
Method: single particle / : Saks AJ, Dominguez R


EMDB Unreleased entry

EMDB-76301:
Two gelsolin domains G2G3 bound to F-actin
Method: single particle / : Saks AJ, Dominguez R


EMDB Unreleased entry

EMDB-58700:
Amyloid beta oligomer Interactions with Extracellular Vesicles by Cryo-ET
Method: electron tomography / : Khursheed A, Viles JH, Zhang H, Shang Q, Tian Y, Szwedziak P, Volkov VA


EMDB Unreleased entry

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-64603:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64642:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uxw:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uz9:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-71429:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71430:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71431:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71432:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71433:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71434:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa1:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa2:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa3:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa4:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa5:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa6:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-63639:
cryo-EM structure of PSII D1-V185T from Thermosynechococcus vestitus BP-1
Method: single particle / : Jiang HW, Nakajima Y, Akita F, Li HJ, Kato K, Sugiura M, Shen JR

PDB-9m5a:
cryo-EM structure of PSII D1-V185T from Thermosynechococcus vestitus BP-1
Method: single particle / : Jiang HW, Nakajima Y, Akita F, Li HJ, Kato K, Sugiura M, Shen JR

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

PDB-9v35:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v38:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3c:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more