[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 72 items for (author: kim & mk)

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

EMDB-64397:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64398:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64399:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upm:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upn:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upo:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-44865:
Local refinement of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-44866:
Global reconstruction of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-47426:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

EMDB-44945:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking local map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44946:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking, local refinement of heterotrimer
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44961:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking global map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44672:
GI.1 DS1 virus-like particle
Method: single particle / : Olia AS, Verardi R, Gorman J, Kwong PD

EMDB-44673:
Norovirus GI.1 VLP bound to 16E10 Fab
Method: single particle / : Olia AS, Kwong PD

EMDB-44734:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

PDB-9bof:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

EMDB-43797:
Local refinement of 5-HT2AR bound to 5-HT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43798:
Global reconstruction 5-HT2AR bound to 5-HT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43799:
Local refinement of 5-HT2AR bound to 2-bromo-LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43800:
Global reconstruction of 5-HT2AR bound to 2-bromo-LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43801:
Local refinement of 5-HT2AR bound to DMT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43802:
Global reconstruction of 5-HT2AR bound to DMT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43803:
Local refinement of 5-HT2AR bound to LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43804:
Global reconstruction of 5-HT2AR bound to LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43805:
Local refinement of 5-HT2AR bound to Mescaline in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43806:
Global reconstruction of 5-HT2AR bound to mescaline in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43807:
Local refinement of 5-HT2AR bound to psilocin in complex with a mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43808:
Global reconstruction of 5-HT2AR bound to psilocin in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43809:
Local refinement of 5-HT2AR bound to RS130-180 in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43810:
Global reconstruction of 5-HT2AR bound to RS130-180 in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-46946:
TRIF TIR Filament Cryo-EM Structure
Method: helical / : Manik MK, Xiao L, Wu H

EMDB-46977:
CryoEM structure of the TIR domain from human TRAM
Method: helical / : Hedger A, Pospich S, Pan M, Gu W, Ve T, Raunser S, Landsberg M, Nanson JD, Kobe B

EMDB-39577:
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39578:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39579:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39580:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39581:
E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-37318:
DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

EMDB-37333:
Structure of DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

PDB-8w69:
DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

EMDB-37257:
Bacterial serine protease
Method: single particle / : Lee IG, Jeon H

EMDB-37331:
Cryo-EM structure of the DegQ dodecamer with a lysozyme
Method: single particle / : Lee IG, Jeon H

PDB-8kic:
Bacterial serine protease
Method: single particle / : Lee IG, Jeon H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more