[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 15,192 items for (author: ke & z)

EMDB-63297:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63331:
Consensus map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63332:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63333:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63334:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63335:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the C-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63336:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the N-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63337:
Composite map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63339:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63508:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-63509:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63510:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63511:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-65889:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lqj:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lrk:
Cryo-EM structure of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

PDB-9lrm:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lyi:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

PDB-9wdc:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-74399:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

PDB-9zld:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

EMDB-72976:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

PDB-9yi2:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

EMDB-53326:
Consensus Map of the Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-73991:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-73992:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbj:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbk:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-53912:
Unsheathed flagellar filament in Vibrio alginolyticus
Method: single particle / : Qin K, Einenkel R, Zhao W, Erhardt M, Bergeron JRC

EMDB-53917:
Sheathed flagellar filament in Vibrio alginolyticus
Method: single particle / : Qin K, Einenkel R, Erhardt M, Bergeron JRC

EMDB-53992:
Polar sheathed flagella tips in Vibrio alginolyticus
Method: electron tomography / : Qin K, Einenkel R, Zhao W, Atherton J, Erhardt M, Bergeron JRC

PDB-9rcb:
Unsheathed flagellar filament in Vibrio alginolyticus
Method: single particle / : Qin K, Einenkel R, Zhao W, Erhardt M, Bergeron JRC

EMDB-54248:
Trispecific fab 17 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54261:
Trispecific fab 34 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54263:
Trispecific fab 49 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-55110:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open apo state (without synthetic nanobody)
Method: single particle / : Kolokouris D, Zeng YC, Newstead S

PDB-9sqh:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open apo state (without synthetic nanobody)
Method: single particle / : Kolokouris D, Zeng YC, Newstead S

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-56885:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

PDB-28vj:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

EMDB-66042:
Open State of Apo-P-Glycoprotein
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-66043:
Closed State of Apo-P-Glycoprotein.
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-53330:
Central Tapasin Scaffold of the Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-53331:
Editing Module 2 of the Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-53332:
Translocation Module of the Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-53334:
Editing Module 1 of the Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-55454:
Cryo-electron tomogram of cyanobacterium Anabaena sp. PCC 7120 with putative CorM filaments (Isonet-processed)
Method: electron tomography / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL, Schur FKM, Loose M

EMDB-55455:
Cryo-electron tomogram of delta-cse mutant cyanobacterium Anabaena sp. PCC 7120 with putative CorM filaments
Method: electron tomography / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL, Schur FKM, Loose M

EMDB-70069:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ, Global Map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70070:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ- local map
Method: single particle / : Robertson MJ, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more