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Structure paper

TitleThe dynamic basis of G-protein recognition and activation by a GPCR.
Journal, issue, pagesNature, Vol. 652, Issue 8110, Page 812-821, Year 2026
Publish dateMar 11, 2026
AuthorsKazuhiro Kobayashi / Kouki Kawakami / Toshiki E Matsui / Shun Yokoi / Masahiro Fukuda / Tomohiro J Narita / Hiroki Arai / Mai Tambo / Takashi Sumikama / Manae Tatsumi / Keitaro Yamashita / Junki Koyanagi / Mai Kugawa / Hisako Ikeda / Ayumi Sumino / Ayori Mitsutake / Brian K Kobilka / Asuka Inoue / Hideaki E Kato /
PubMed AbstractG-protein-coupled receptor (GPCR) signalling occurs through heterotrimeric G proteins, whose selective activation leads to distinct cellular outcomes. Although more than 200 GPCR-G protein complex ...G-protein-coupled receptor (GPCR) signalling occurs through heterotrimeric G proteins, whose selective activation leads to distinct cellular outcomes. Although more than 200 GPCR-G protein complex structures have been determined, these static snapshots provide limited insight into the dynamics of G-protein association and dissociation. Here we present cryo-electron microscopy structures of human neurotensin receptor type 1 (NTSR1) with minimally modified G and G, showing how the receptor's intracellular surface dynamically rearranges to accommodate each G-protein subtype. Furthermore, time-resolved cryo-electron microscopy analyses of NTSR1-G visualized G-protein dissociation processes on GDP/GTP binding. Characterization of more than 20 intermediates, complemented by mutational and computational analyses, identifies four key mechanistic features. First, GDP/GTP induces G release from both canonical and non-canonical active conformations with distinct kinetics. Second, NTSR1 uses common intracellular rearrangements to recognize different G-protein subtypes and to promote activation of a single subtype. Third, separation from Gβγ involves stepwise remodelling of the Gα switches I-III. Finally, G dissociates from the receptor through a pathway that is distinct from that of G, and the canonical and non-canonical NTSR1-G complexes further diverge in their dissociation trajectories. These findings provide a comprehensive framework for understanding GPCR signalling dynamics and guiding signal-targeted therapeutic development.
External linksNature / PubMed:41813902
MethodsEM (single particle)
Resolution2.24 - 3.65 Å
Structure data

EMDB-64904, PDB-9vat:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Go complex in nucleotide-free C state
Method: EM (single particle) / Resolution: 3.37 Å

EMDB-64905, PDB-9vau:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Go complex in nucleotide-free NC state 1
Method: EM (single particle) / Resolution: 2.95 Å

EMDB-64906, PDB-9vav:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Go complex in nucleotide-free NC state 2
Method: EM (single particle) / Resolution: 2.99 Å

EMDB-64907, PDB-9vaw:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gq (delipidated) complex in nucleotide-free C state
Method: EM (single particle) / Resolution: 2.24 Å

EMDB-64908, PDB-9vax:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 complex in nucleotide-free C state 1
Method: EM (single particle) / Resolution: 3.46 Å

EMDB-64909, PDB-9vay:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 complex in nucleotide-free C state 2
Method: EM (single particle) / Resolution: 3.65 Å

EMDB-64910, PDB-9vaz:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 complex in nucleotide-free NC state 1
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-64911, PDB-9vb0:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 complex in nucleotide-free NC state 2
Method: EM (single particle) / Resolution: 3.19 Å

EMDB-64912, PDB-9vb1:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 complex in nucleotide-free NC state 3
Method: EM (single particle) / Resolution: 3.31 Å

EMDB-64913, PDB-9vb2:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GDP-bound, AHD-closed C state 1, plunge-frozen 8 seconds after GDP addition
Method: EM (single particle) / Resolution: 3.08 Å

EMDB-64914, PDB-9vb3:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GDP-bound, AHD-closed C state 2, plunge-frozen 8 seconds after GDP addition
Method: EM (single particle) / Resolution: 3.02 Å

EMDB-64915, PDB-9vb4:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GDP-bound, AHD-closed C state 1, plunge-frozen 15 seconds after GDP addition
Method: EM (single particle) / Resolution: 2.85 Å

EMDB-64916, PDB-9vb5:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GDP-bound, AHD-closed C state 2, plunge-frozen 15 seconds after GDP addition
Method: EM (single particle) / Resolution: 3.14 Å

EMDB-64917, PDB-9vb6:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open C state, plunge-frozen 8 seconds after GTP addition
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-64918, PDB-9vb7:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-closed C state 1, plunge-frozen 8 seconds after GTP addition
Method: EM (single particle) / Resolution: 3.01 Å

EMDB-64919, PDB-9vba:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-closed C state 2, plunge-frozen 8 seconds after GTP addition
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-67426, PDB-20zc:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 (delipidated) complex in nucleotide-free C state
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-67427, PDB-20zd:
Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gi1 (delipidated) complex in nucleotide-free NC state
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-67429, PDB-20zg:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open C state 1, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-67430, PDB-20zh:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open C state 2, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-67431, PDB-20zi:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open NC state 1, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-67432, PDB-20zj:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open NC state 2, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-67433, PDB-20zk:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open NC state 3, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-67434, PDB-20zl:
Cryo-EM structure of the human neurotensin receptor 1 (hNTSR1)-Gi1 complex in the GTP-bound, AHD-open NC state 4, plunge-frozen 0-5 seconds after GTP addition
Method: EM (single particle) / Resolution: 3.1 Å

Chemicals

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-HOH:
WATER

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

Source
  • homo sapiens (human)
  • synthetic construct (others)
  • mus musculus (house mouse)
KeywordsMEMBRANE PROTEIN / GPCR / NTSR1 / neurotensin / G-protein

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