[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 17 items for (author: karki & p)

EMDB-73380:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9ys3:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-73612:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9yxn:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-54774:
Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-54789:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-55387:
Cryo-EM structure of arabidopsis translating ribosome
Method: single particle / : Karki S, Paavilainen V

EMDB-55388:
Cryo-EM of arabidopsis non-translatin ribosome structure
Method: single particle / : Karki S, Paavilainen V

PDB-9scu:
Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

PDB-9sdp:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-70119:
Pr/Pr homodimer of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-16017:
Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Method: single particle / : Karki S, Javanainen M, Tranter D, Rehan S, Huiskonen J, Happonen L, Paavilainen V

PDB-8bf9:
Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Method: single particle / : Karki S, Javanainen M, Tranter D, Rehan S, Huiskonen J, Happonen L, Paavilainen V

EMDB-10213:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to RBM39 and Indisulam
Method: single particle / : Srinivas H

PDB-6sj7:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to RBM39 and Indisulam
Method: single particle / : Srinivas H

EMDB-3730:
Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
Method: single particle / : Graf M, Berninghausen O

PDB-5o2r:
Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
Method: single particle / : Graf M, Berninghausen O, Beckmann R, Wilson DN

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more