[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 18,665 items for (author: ju & s)

EMDB-64756:
Apo SLC36A1
Method: single particle / : Zhang SS

EMDB-64757:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

EMDB-64759:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

EMDB-64762:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

PDB-9v3t:
Apo SLC36A1
Method: single particle / : Zhang SS

PDB-9v3v:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

PDB-9v3x:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

PDB-9v3z:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-55067:
CRYO-EM CONSENSUS MAP OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-55068:
CRYO-EM FOCUSED REFINEMENT MAP OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-54659:
Cryo-EM structure of Rat NHE6 D293A variant
Method: single particle / : Jung S, Gulati A, Reichenbach T, Kokane S, Yeo H, Drew D

EMDB-54660:
Cryo-EM structure of Rat NHE6 in detergent
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

EMDB-54661:
Cryo-EM structure of Rat NHE6 in nanodisc
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

EMDB-54662:
Cryo-EM structure of Rat NHE6 K351A variant
Method: single particle / : Jung S, Kokane S, Reichenbach T, Yeo H, Gulati A, Drew D

PDB-9s8c:
Cryo-EM structure of Rat NHE6 D293A variant
Method: single particle / : Jung S, Gulati A, Reichenbach T, Kokane S, Yeo H, Drew D

PDB-9s8d:
Cryo-EM structure of Rat NHE6 in detergent
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

PDB-9s8e:
Cryo-EM structure of Rat NHE6 in nanodisc
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

PDB-9s8g:
Cryo-EM structure of Rat NHE6 K351A variant
Method: single particle / : Jung S, Kokane S, Reichenbach T, Yeo H, Gulati A, Drew D

EMDB-52554:
70S map (consensus map) for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis) TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-55929:
Structure of human CLN8 in an apo-state
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56021:
Structure of human CLN8 in the presence of docosahexaenoate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56022:
Structure of human CLN8 in the presence of oleate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-52555:
50S-focused map for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis)TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-52556:
30S-focused map for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis)TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-69908:
Cryo-EM structure of TRP melastatin channel in the desensitized state, with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69909:
Cryo-EM structure of TRP melastatin channel with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69929:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 3, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69930:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69932:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 2 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69933:
Cryo-EM structure of TRP melastatin channel in the putative twofold intermediate 1 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69934:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-75126:
E. coli TGT covalent intermediate with 2 tRNAs
Method: single particle / : Harjung A, Devaraj N

PDB-10fc:
E. coli TGT covalent intermediate with 2 tRNAs
Method: single particle / : Harjung A, Devaraj N

EMDB-54355:
Cryo-EM structure of a single-chain beta1-adrenoceptor - AmpC beta-lactamase fusion protein
Method: single particle / : Benoit RM, Afanasyev P

PDB-9rx1:
Cryo-EM structure of a single-chain beta1-adrenoceptor - AmpC beta-lactamase fusion protein
Method: single particle / : Benoit RM, Afanasyev P

EMDB-58048:
Complex of transglutaminase 2 and the 45 kDa domain of fibronectin
Method: single particle / : Heggelund JE, Ali-Ahmad A, Sekulic N, Sollid LM

PDB-30uc:
Complex of transglutaminase 2 and the 45 kDa domain of fibronectin
Method: single particle / : Heggelund JE, Ali-Ahmad A, Sekulic N, Sollid LM

EMDB-66504:
Phage T4 neck in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66505:
Phage T4 sheath in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66506:
Phage T4 inner baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66507:
Phage T4 peripheral baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66508:
Phage T4 tip of the tail tube in post-tail-contraction state (genome-empty particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66675:
Phage T4 protruding part of the tail tube in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3o:
Phage T4 neck in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3p:
Phage T4 sheath in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3q:
Phage T4 inner baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more