[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 609 items for (author: ivan & v)

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-47820:
Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

EMDB-70295:
Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

PDB-9e9x:
Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

PDB-9obp:
Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70493:
BG505 GT1.1 SOSIP in complex with CD4bs epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70494:
BG505 GT1.1 SOSIP in complex with gp41 glycan hole epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70495:
BG505 GT1.1 SOSIP in complex with gp41 fusion peptide epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

PDB-9mi0:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mia:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mib:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mih:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mii:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-51681:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51682:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (60S body)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51683:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (UFM1 E3 ligase and NEMF)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51684:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (LTN1)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51685:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Consensus refinement map)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51686:
60S ribosomal subunit in complex with RQC components NEMF and LTN1
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51687:
60S ribosomal subunit in complex with E3-UFM1 ligase, NEMF, and Sec61
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-51688:
60S ribosomal subunit in complex with NEMF and Sec61
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

PDB-9gy4:
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
Method: single particle / : Penchev I, Gumbin S, Becker T, Kopito R, Beckmann R

EMDB-50623:
carvedilol-B1AR-arrestin2-V2Rpp complex
Method: single particle / : Tatli M, Abiko LA, Petrovic I, Stahlberg H, Grzesiek S

EMDB-63513:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-63514:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyo:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyp:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-49656:
Rabbit RB142 polyclonal Fab in complex with HIV-1 1086C NFL Env trimer
Method: single particle / : Lin RN, Torres JL, Ozorowski G, Ward AB

EMDB-41821:
Plasmodium falciparum gametocyte surface protein Pfs48/45 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

EMDB-41822:
Local refinement of Plasmodium falciparum gametocyte surface protein Pfs48/45 Domains 1 and 2 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

PDB-8u1p:
Local refinement of Plasmodium falciparum gametocyte surface protein Pfs48/45 Domains 1 and 2 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

EMDB-48323:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

PDB-9mk9:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

EMDB-19975:
Respiratory complex I from Paracoccus denitrificans in DDM
Method: single particle / : Ivanov BS, Bridges HR, Hirst J

EMDB-19976:
Respiratory complex I from Paracoccus denitrificans in DDM
Method: single particle / : Ivanov BS, Bridges HR, Hirst J

EMDB-19977:
Cytochrome bc1 complex
Method: single particle / : Ivanov BS, Bridges HR, Hirst J

EMDB-51496:
Structure of the F-tractin-F-actin complex
Method: single particle / : Shatskiy D, Belyy A

EMDB-52289:
Structure of the optimized F-tractin in complex with F-actin
Method: single particle / : Shatskiy D, Belyy A

PDB-9gob:
Structure of the F-tractin-F-actin complex
Method: single particle / : Shatskiy D, Belyy A

PDB-9hm9:
Structure of the optimized F-tractin in complex with F-actin
Method: single particle / : Shatskiy D, Belyy A

EMDB-46632:
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Method: single particle / : Pichkur EB, Panteleev PV, Konevega AL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more