[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 228 items for (author: iguchi & h)

EMDB-65855:
In situ subtomogram average of Hodarchaeales HC1 actin filament
Method: subtomogram averaging / : Imachi H, Nobu MK, Ishii S, Hashiguchi H, Hirakata Y, Hosogi N, Ikuta T, Isaji Y, Miyata M, Miyazaki M, Morono Y, Murata K, Nakagawa S, Narita A, Ogawara M, Okada S, Saito Y, Sakai S, Shimamura S, Tahara YO, Takaki Y, Takano Y, Tasumi E, Uematsu K, Yoshimura T, Takai K

PDB-9wc4:
Hodarchaeales HC1 actin filament
Method: subtomogram averaging / : Imachi H, Nobu MK, Ishii S, Hashiguchi H, Hirakata Y, Hosogi N, Ikuta T, Isaji Y, Miyata M, Miyazaki M, Morono Y, Murata K, Nakagawa S, Narita A, Ogawara M, Okada S, Saito Y, Sakai S, Shimamura S, Tahara YO, Takaki Y, Takano Y, Tasumi E, Uematsu K, Yoshimura T, Takai K

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-64609:
SARS-CoV-2 Ancestral strain spike S-cred
Method: single particle / : Hemmi T, Yajima H, Hashiguchi T

PDB-9uyd:
SARS-CoV-2 Ancestral strain spike S-cred
Method: single particle / : Hemmi T, Yajima H, Hashiguchi T

EMDB-64322:
Giraffe KIF5A motor domain in nucleotide free state bound to microtubule
Method: helical / : Imasaki T, Yamagishi Y, Shigematsu H, Nitta R

EMDB-62568:
Cryo-EM structure of wild type RIG-I with 5'p-RNA
Method: single particle / : Tan YB, Luo D

EMDB-62574:
Cryo-EM structure of E373A mutant RIG-I with 5'p-RNA
Method: single particle / : Tan YB, Luo D

PDB-9ktw:
Cryo-EM structure of wild type RIG-I with 5'p-RNA
Method: single particle / : Tan YB, Luo D

PDB-9ku4:
Cryo-EM structure of E373A mutant RIG-I with 5'p-RNA
Method: single particle / : Tan YB, Luo D

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-53573:
Murine AA amyloid fibril morphology III (AA III)
Method: helical / : Andreotti G, Schmidt M, Faendrich M

PDB-9r4z:
Murine AA amyloid fibril morphology III (AA III)
Method: helical / : Andreotti G, Schmidt M, Faendrich M

EMDB-53721:
Asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53722:
Cytoplasmic ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53723:
Inner ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53724:
Nuclear ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53725:
Asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53727:
Top nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53728:
Inner ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53729:
Bottom nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53731:
Nuclear pore complex in the nuclear envelope (NE-NPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53732:
Nuclear pore complex in nucleoplasmic membranes (nNPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53739:
Asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53740:
Cytoplasmic ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53741:
Inner ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53742:
Nuclear ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53743:
Nuclear basket asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53744:
Asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53745:
Top cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53746:
Inner ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53747:
Bottom cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53750:
Nuclear pore complex in the nuclear envelope (NE-NPC) in D. melanogaster Nup358::VN/Nup358::VC cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53751:
Nuclear pore complex in cytoplasmic membranes (cNPC) in D. melanogaster Nup358::VN/Nup358::VC cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-64005:
Iota toxin Ib pore serine-clamp mutant(C1)
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

EMDB-64894:
Tomogram of a Candidatus Margulisarchaeum peptidophila strain HC1 cell
Method: electron tomography / : Imachi H, Hosogi N

EMDB-39544:
Iota toxin Ib pore serine-clamp mutant
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

PDB-8yrm:
Iota toxin Ib pore serine-clamp mutant
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

EMDB-39370:
SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state)
Method: single particle / : Anraku Y, Kita S, Onodera T, Tadokoro T, Ito S, Adachi Y, Kotaki R, Suzuki T, Hashiguchi T, Takahashi Y, Maenaka K

EMDB-39371:
SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (2-up state)
Method: single particle / : Anraku Y, Kita S, Onodera T, Tadokoro T, Ito S, Adachi Y, Kotaki R, Suzuki T, Hashiguchi T, Takahashi Y, Maenaka K

EMDB-39372:
SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv focused on RBD and NT-108 scFv interface
Method: single particle / : Anraku Y, Kita S, Onodera T, Tadokoro T, Ito S, Adachi Y, Kotaki R, Suzuki T, Hashiguchi T, Takahashi Y, Maenaka K

PDB-8ykg:
Structure of SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state)
Method: single particle / : Anraku Y, Kita S, Onodera T, Tadokoro T, Ito S, Adachi Y, Kotaki R, Suzuki T, Hashiguchi T, Takahashi Y, Maenaka K

PDB-8ykh:
Structure of SARS-CoV-2 spike RBD in complex with NT-108 scFv
Method: single particle / : Anraku Y, Kita S, Onodera T, Tadokoro T, Ito S, Adachi Y, Kotaki R, Suzuki T, Hashiguchi T, Takahashi Y, Maenaka K

EMDB-52153:
Cytoplasmic ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52154:
Inner ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52155:
Nuclear ring of the nuclear pore complex from wild-type mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52156:
Cytoplasmic ring of the nuclear pore complex from Nup133-deficient mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

EMDB-52157:
Inner ring of the nuclear pore complex from Nup133-deficient mouse embryonic stem cell
Method: subtomogram averaging / : Taniguchi R, Beck M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more