[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 237 items for (author: hendrik & d)

EMDB-53969:
FZD7 in complex with negative allosteric modulator C407
Method: single particle / : Scharf MM, Graetz L, Kinsolving J, Voss J, Carrasco-Busturia D, Forsberg B, Kolb P, Schulte G

PDB-9rhg:
FZD7 in complex with negative allosteric modulator C407
Method: single particle / : Scharf MM, Graetz L, Kinsolving J, Voss J, Carrasco-Busturia D, Forsberg B, Kolb P, Schulte G

EMDB-54220:
Cryo-EM structure of MATE transporter NorM-VC in complex with doxorubicin
Method: single particle / : Romane K, Hsieh PY, Kowal J, Locher KP, van Veen HW

PDB-9rsj:
Cryo-EM structure of MATE transporter NorM-VC in complex with doxorubicin
Method: single particle / : Romane K, Hsieh PY, Kowal J, Locher KP, van Veen HW

EMDB-52456:
Amyloid fibril of TTR
Method: helical / : Aibara S, Kassner E, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

EMDB-52457:
Amyloid fibril of apolipoprotein A-IV
Method: helical / : Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

PDB-9hx3:
Amyloid fibril of TTR
Method: helical / : Aibara S, Kassner E, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

PDB-9hx4:
Amyloid fibril of apolipoprotein A-IV
Method: helical / : Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

EMDB-53137:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53138:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53139:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53140:
Cryo-EM structure of the PlPVC1 fiber in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53141:
Cryo-EM structure of the PlPVC1 sheath, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53143:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgl:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgm:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgn:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgo:
Interaction between PlPVC1 baseplate and fiber in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgp:
Cryo-EM structure of the PlPVC1 sheath, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18752:
EcZorAB_WT ZorB PGBDs Local refinement
Method: single particle / : Haidai H, Nicholas MIT

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qy7:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

PDB-8qyc:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

PDB-8qyd:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

PDB-8qyh:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

PDB-8qyk:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qyy:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-50040:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

EMDB-50113:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

PDB-9exk:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

PDB-9f0l:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Motoyuki H, Dietz H

EMDB-18575:
Afp1-17 cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18576:
Afp1-16 cap
Method: single particle / : Rebrova EM, Taylor MMI

EMDB-18577:
Afp1-16+ Afp18 delta C8 truncation-Casphi2 cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18579:
Afp1-16 + Afp18 deltaC8-ExoU cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18580:
Anti-feeding prophage with Afp18DC8-ExoU toxin-effector chimera
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-19881:
High resolution structure of FZD7 in inactive conformation
Method: single particle / : Bous J, Kinsolving J, Gratz L, Scharf MM, Voss J, Selcuk B, Adebali O, Schulte G

PDB-9epo:
High resolution structure of FZD7 in inactive conformation
Method: single particle / : Bous J, Kinsolving J, Gratz L, Scharf MM, Voss J, Selcuk B, Adebali O, Schulte G

PDB-9ew2:
High resolution structure of FZD7 in complex with miniGs protein
Method: single particle / : Bous J, Kinsolving J, Gratz L, Scharf MM, Voss J, Selcuk B, Adebali O, Schulte G

EMDB-18524:
Anti-feeding prophage with native Afp18 toxin
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18525:
Anti-feeding prophage with Afp18DC8-Casphi2 toxin-effector chimera
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18526:
Anti-feeding prophage with Afp18DC4 toxin (half of Afp18, N-terminal half)
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18527:
Anti-feeding prophage with Afp18DC8-Casphi2 toxin-effector chimera
Method: single particle / : Rebrova EM, Taylor NMI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more