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Showing 1 - 50 of 17,445 items for (author: hang & w)

EMDB-68781:
In situ cryo sub-tomogram average of axoneme in sperm flagella from Rgs22 knockout mice
Method: subtomogram averaging / : Ye-Jun P

EMDB-66931:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

PDB-9xj8:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

EMDB-54707:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

PDB-9saz:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-80113:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

EMDB-80118:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

EMDB-80125:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

PDB-25hr:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

PDB-25hs:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

PDB-25hw:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

EMDB-77573:
Retron-Kva2 Bottom Lobe
Method: single particle / : Hibshman GN

EMDB-77574:
Peripheral Bottom Lobe RT
Method: single particle / : Hibshman GN

EMDB-77575:
Retron-Kva2 Top Lobe
Method: single particle / : Hibshman GN

EMDB-77583:
Retron-Kva2 Complex Consensus
Method: single particle / : Hibshman GN

EMDB-77585:
Retron-Kva2 Complex Composite
Method: single particle / : Hibshman GN

PDB-36ht:
Retron-Kva2 Complex Composite
Method: single particle / : Hibshman GN

EMDB-75093:
Cryo-EM structure of 50 kDa outer membrane protein (omp50) with no N-ternimal helix
Method: single particle / : Zhang Z, Gregor W

PDB-10dn:
Cryo-EM structure of 50 kDa outer membrane protein (omp50) with no N-ternimal helix
Method: single particle / : Zhang Z, Gregor W

EMDB-75081:
Cryo-EM structure of major outer membrane protein (PorA) with Loop4 missing
Method: single particle / : Zhang Z, Gregor W

PDB-10db:
Cryo-EM structure of major outer membrane protein (PorA) with Loop4 missing
Method: single particle / : Zhang Z, Gregor W

EMDB-55458:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55459:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55461:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55462:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55463:
In-cell structure of dark-treated wild-type C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55464:
In-cell structure of chlL-deleted C.reinhardtii chloroplast F-ATPase
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55465:
In-cell structure of chlL-deleted C.reinhardtii cytoplasmic 80S ribosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55466:
In-cell structure of chlL-deleted C.reinhardtii RuBisCo
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-75037:
Cryo-EM structure of 50 kDa outer membrane protein (omp50) in C. jejuni
Method: single particle / : Zhang Z, Gregor W, Maharjan R

PDB-10aw:
Cryo-EM structure of 50 kDa outer membrane protein (omp50) in C. jejuni
Method: single particle / : Zhang Z, Gregor W

EMDB-82115:
In Situ Subtomogram Average of the 80S Ribosome in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82118:
In Situ Subtomogram Average of the 60S Ribosomal Subunit in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82119:
In Situ Subtomogram Average of the Free 60S Ribosomal Subunit in the Soma of Rat Hippocampal Neuron
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82120:
In Situ Subtomogram Average of the 80S Ribosome in the Soma of Rat Hippocampal Neurons
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-75029:
C. Jejuni Simpl-Like Protein
Method: single particle / : Gregor WD, Zhang Z, Yu EW

PDB-10am:
C. Jejuni Simpl-Like Protein
Method: single particle / : Gregor WD, Zhang Z, Yu EW

EMDB-75023:
Cryo-EM structure of major outer membrane protein (PorA) in C. jejuni
Method: single particle / : Zhang Z, Gregor W, Maharjan R

PDB-10ac:
Cryo-EM structure of major outer membrane protein (PorA) in C. jejuni
Method: single particle / : Zhang Z, Gregor W

EMDB-69516:
In-cell map of mitoribosome from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, San J

EMDB-69519:
Tomogram of mitochondria in T cell from middle-aged patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69521:
Tomogram of mitochondria in T cell from older patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

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