[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 23 items for (author: giesebrecht & j)

EMDB-0102:
symmetric structure of tPDE6
Method: single particle / : Qureshi BM, Behrmann E, Loerke J, Spahn CMT, Heck M

PDB-4cxg:
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath DJF, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

PDB-4cxh:
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath DJF, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

PDB-4uje:
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath DJF, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

EMDB-2620:
POST-translocational 80S ribosomal state of Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

EMDB-2621:
PRE-translocational (classical-1) 80S ribosomal state of Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

EMDB-2622:
PRE-translocational (classical-2) 80S ribosomal state of Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

EMDB-2623:
Sampling intermediate of Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

EMDB-2624:
Recognition intermediate of Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Method: single particle / : Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CMT

PDB-4v68:
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
Method: single particle / : Schuette JC, Spahn CMT

PDB-3j0l:
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn CM

PDB-3j0o:
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn CM

PDB-3j0p:
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn CM

PDB-3j0q:
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn CM

EMDB-5326:
Cryo EM reconstruction of mammalian 80S ribosome in classic PRE state 1
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn C

EMDB-5327:
Cryo EM reconstruction of mammalian 80S ribosome in classic PRE state 2
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn C

EMDB-5328:
Cryo EM reconstruction of mammalian 80S ribosome in rotated PRE state 1
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn C

EMDB-5329:
Cryo EM reconstruction of mammalian 80S ribosome in rotated PRE state 2
Method: single particle / : Budkevich T, Giesebrecht J, Altman R, Munro J, Mielke T, Nierhaus K, Blanchard S, Spahn C

EMDB-5030:
GTPase activation of elongation factor EF-Tu by the ribosome during decoding: a cryo-EM structure of the Thermus thermophilus ribosome in which the ternary complex of EF-Tu, tRNA and guanine nucleotide has been trapped on the ribosome with the antibiotic kirromycin.
Method: single particle / : Schuette JC, Murphy F, Kelley AC, Weir J, Giesebrecht J, Connelll SR, Loerke J, Mielke T, Zhang W, Penczek PA, Ramakrishnan V, Spahn CMT

EMDB-1315:
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT

PDB-2om7:
Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors
Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT

EMDB-1285:
Structure of the ribosome-bound cricket paralysis virus IRES RNA.
Method: single particle / : Schuler M, Connell SR, Lescoute A, Giesebrecht J, Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E, Spahn CM

PDB-2noq:
Structure of ribosome-bound cricket paralysis virus IRES RNA
Method: single particle / : Schuler M, Connell SR, Lescoute A, Giesebrecht J, Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E, Spahn CMT

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more