[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,043 items for (author: gai & d)

EMDB-74020:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Sibert BS, Parrell D, Yang JE, Kumar A, Larson MR, Montemayor EJ, Maindola P, Cai K, Wright ER

PDB-9zc2:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Montemayor EJ, Sibert BS, Parrell D, Yang JE, Larson MR, Gaines M, Kumar A, Maindola P, Cai K, Woods M, Wright ER

EMDB-52833:
Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)
Method: helical / : Snieckute R, Sulskis D, Jocyte A, Venclovaite U, Tamulyte R, Ziaunys M, Smirnovas V, Sakalauskas A

PDB-9ic7:
Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)
Method: helical / : Snieckute R, Sulskis D, Jocyte A, Venclovaite U, Tamulyte R, Ziaunys M, Smirnovas V, Sakalauskas A

EMDB-52330:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 1
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

EMDB-52331:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 2
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

PDB-9hpi:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 1
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

PDB-9hpj:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 2
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-53046:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qe2:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-54802:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

EMDB-54805:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

EMDB-54809:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

EMDB-54827:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

EMDB-54883:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

EMDB-54923:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

PDB-9se5:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

PDB-9sea:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

PDB-9seg:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

PDB-9sfl:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

PDB-9sh0:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

PDB-9si1:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

EMDB-52968:
Cryo-EM structure of the helicase core of ZNFX1
Method: single particle / : Grabarczyk DB, Reznikow V, Kurzbauer R, Clausen T

PDB-9q9z:
Cryo-EM structure of the helicase core of ZNFX1
Method: single particle / : Grabarczyk DB, Reznikow V, Kurzbauer R, Clausen T

EMDB-52199:
Focused map of the MnmG dimer within the MnmE-MnmG a4b2 complex
Method: single particle / : Maes L, Galicia C, Fislage M, Versees W

PDB-9hir:
MnmG dimer within the MnmE-MnmG a4b2 complex
Method: single particle / : Maes L, Galicia C, Fislage M, Versees W

EMDB-70838:
Rabbit 37496 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70839:
Rabbit 37496 base and gp41-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70840:
Rabbit 37496 base and gp120-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70846:
Rabbit 37496 base and C3V5 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70847:
Rabbit 37450 base, gp41-FP and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70848:
Rabbit 37442 base and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70852:
NHP RJh18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70855:
NHP RUv18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70858:
NHP RUv18 V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70860:
NHP REy18 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-51649:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 1 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51650:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 2 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51654:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 3 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51655:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 4 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51657:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 5 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51658:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 6 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51661:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Low resolution consensus.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-70657:
Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with the Potent Small-Molecule Entry Inhibitor SA-67
Method: single particle / : Xu Y, Xu K

EMDB-70658:
Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with a Potent Small-Molecule Entry Inhibitor ING-16-36
Method: single particle / : Xu Y, Xu K

PDB-9onz:
Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with the Potent Small-Molecule Entry Inhibitor SA-67
Method: single particle / : Xu Y, Xu K

PDB-9oo1:
Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with a Potent Small-Molecule Entry Inhibitor ING-16-36
Method: single particle / : Xu Y, Xu K

EMDB-49827:
Complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Method: single particle / : Doyle LA, Stoddard B, Blower TR, Kaiser B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more