[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 235 items for (author: fink & u)

EMDB-49059:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

PDB-9n6e:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

EMDB-47892:
Wild-type EsCas13d binary complex
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47903:
Intermediate state of wild-type EsCas13d ternary complex
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47904:
Intermediate state of wild-type EsCas13d ternary complex with C4A mismatch
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47905:
Intermediate state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47906:
Inactive state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47907:
Active state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-47908:
Inactive state of wild-type EsCas13d ternary complex with C4A mismatch
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ebu:
Wild-type EsCas13d binary complex
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ec9:
Intermediate state of wild-type EsCas13d ternary complex
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9eca:
Intermediate state of wild-type EsCas13d ternary complex with C4A mismatch
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ecb:
Intermediate state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ecc:
Inactive state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ecd:
Active state of wild-type EsCas13d ternary complex with U10G mismatch
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ece:
Inactive state of wild-type EsCas13d ternary complex with C4A mismatch
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-47902:
Active state of wild-type EsCas13d ternary complex
Method: single particle / : Chou CW, Finkelstein IJ

PDB-9ec8:
Active state of wild-type EsCas13d ternary complex
Method: single particle / : Chou CW, Finkelstein IJ

EMDB-43738:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (consensus map).
Method: single particle / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43739:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43740:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43741:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43758:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament - apo state (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-43759:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament -apo state (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w23:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (consensus map).
Method: single particle / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w25:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, TDI-2804 (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w27:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w28:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament bound to compound, XAV (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w2t:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament - apo state (focused refinement map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

PDB-8w2u:
Cryo-EM structure of human tankyrase 2 SAM-PARP filament -apo state (consensus map).
Method: helical / : Malone BF, Zimmerman JL, Dow LE, Hite RK

EMDB-51434:
Befiradol-bound serotonin 5-HT1A receptor - Gs Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Boettcher B, Rasmussen T

PDB-9gl2:
Befiradol-bound serotonin 5-HT1A receptor - Gs Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Boettcher B, Rasmussen T

EMDB-51039:
Translation-initiation state of human mitochondrial ribosome small subunit (State G)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51042:
Translation-initiation state of human mitochondrial ribosome small subunit (State G)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51043:
Translation-initiation state of human mitochondrial ribosome small subunit (State E)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51045:
Translation-initiation state of human mitochondrial ribosome small subunit (State E)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51046:
Translation-initiation state of human mitochondrial ribosome small subunit (State D)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51047:
Translation-initiation state of human mitochondrial ribosome small subunit (State D)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51048:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51049:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51050:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51051:
Assembly intermediate of human mitochondrial ribosome small subunit (State C)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51052:
Assembly intermediate of human mitochondrial ribosome small subunit (State B)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51053:
Local B-factor-filtered map of an assembly intermediate of human mitochondrial ribosome small subunit (State A)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51054:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51055:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51056:
Assembly intermediate of human mitochondrial ribosome small subunit (State C)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51057:
Assembly intermediate of human mitochondrial ribosome small subunit (State C)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

EMDB-51058:
Assembly intermediate of human mitochondrial ribosome small subunit (State C)
Method: single particle / : Finke AF, Heinrichs M, Aibara S, Richter-Dennerlein R, Hillen HS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more