[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 84 items for (author: dong & mq)

EMDB-61291:
Cryo-EM structure of Tdk1 tetramer complex
Method: single particle / : Zhang J, Ye K

EMDB-61290:
Cryo-EM structure of Tdk1-Bdf1 complex
Method: single particle / : Zhang J, Ye K

EMDB-35827:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37652:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37656:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37657:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37762:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-35365:
Structure of an ancient TsaD-TsaC-SUA5-TcdA modular enzyme (TsaN)
Method: single particle / : Zhang ZL, Jin MQ, Yu ZJ, Chen W, Wang XL, Lei DS, Zhang WH

EMDB-35301:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Global map
Method: single particle / : Li N, Chen S, Gao N

EMDB-35302:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Global map
Method: single particle / : Li N, Chen S, Gao N

EMDB-35307:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Pointed-end segment, TMCC1 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35308:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Pointed-end segment, TMCC2 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35311:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Central segment, TMCC1 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35312:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Central segment, TMCC2 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35329:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Pointed-end segment, headpiece domain of dematin optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35303:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Pointed-end segment
Method: single particle / : Li N, Chen S, Gao N

EMDB-35305:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Central segment
Method: single particle / : Li N, Chen S, Gao N

EMDB-35317:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment
Method: single particle / : Li N, Chen S, Gao N

EMDB-35318:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, adducin optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35319:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, TMCC1 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35320:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, TMCC2 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35321:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, the second spectrin repeat dimer optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35322:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, the first two spectrin repeat dimers optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35324:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Barbed-end segment, the third to fifth spectrin repeat dimers optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-35325:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Barbed-end segment
Method: single particle / : Li N, Chen S, Gao N

EMDB-35327:
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Barbed-end segment, adducin/TMCC1 optimized
Method: single particle / : Li N, Chen S, Gao N

EMDB-31890:
Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex
Method: single particle / : Wu J, Yan Z, Jin Z, Zhang Y

EMDB-31889:
Tom20 subunits
Method: single particle / : Liu DS, Sui SF

EMDB-31904:
Human TOM complex without cross-linking
Method: single particle / : Liu DS, Sui SF

EMDB-31914:
Human TOM complex with cross-linking
Method: single particle / : Liu DS, Sui SF

EMDB-30954:
Monomer of TRAPPII (open)
Method: single particle / : Sui SF, Sun S

EMDB-30955:
Monomer of TRAPPII (Closed)
Method: single particle / : Sui SF, Sun S

EMDB-31021:
Intact TRAPPII (state I).
Method: single particle / : Mi CC, Sui SF

EMDB-31022:
Monomer of Ypt32-TRAPPII
Method: single particle / : Mi CC, Sui SF

EMDB-31027:
Intact TRAPPII (state III).
Method: single particle / : Mi CC, Sui SF

EMDB-31028:
Intact TRAPPII (State II)
Method: single particle / : Mi CC, Sui SF

EMDB-31038:
Intact Ypt32-TRAPPII (dimer).
Method: single particle / : Mi CC, Sui SF

EMDB-30650:
Cryo-EM structure of the Ams1 and Nbr1 complex
Method: single particle / : Zhang J, Ye K

EMDB-30652:
Cryo-EM structure of the Ape4 and Nbr1 complex
Method: single particle / : Zhang J, Ye K

EMDB-0948:
Cryo-EM structure of a pre-60S ribosomal subunit - state C
Method: single particle / : Liang X, Zuo M

EMDB-0963:
Cryo-EM structure of a pre-60S ribosomal subunit - state B
Method: single particle / : Liang X, Zuo M

EMDB-0964:
Cryo-EM structure of a pre-60S ribosomal subunit - state preA
Method: single particle / : Liang X, Zuo M

EMDB-0978:
Cryo-EM structure of a human pre-60S ribosomal subunit - state A
Method: single particle / : Liang X, Zuo M

EMDB-9663:
Saccharomyces cerevisiae SAGA complex
Method: single particle / : Zheng XD, Liu GC, Guan HP, Li HT

EMDB-9664:
Tra1 subunit from Saccharomyces cerevisiae SAGA complex
Method: single particle / : Zheng XD, Liu GC

EMDB-9697:
alpha-SNAP-SNARE subcomplex in the whole 20S complex
Method: single particle / : Huang X, Sun S

EMDB-9698:
NSF-D1D2 part in the whole 20S complex
Method: single particle / : Huang X, Sun S

EMDB-9723:
state1 of the whole 20S complex
Method: single particle / : Huang X, Wang X, Sun S, Sui SF

EMDB-9724:
state2 of the whole 20S complex
Method: single particle / : Huang X, Wang X, Sun S, Sui SF

EMDB-9725:
state3 of the whole 20S complex
Method: single particle / : Huang X, Wang X, Sun S, Sui SF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more