[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 15,749 items for (author: di & y)

EMDB-76261:
Spermine-blocked open-state cryo-EM structure of human TRPV6 channel in cNW30 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

PDB-12ag:
Spermine-blocked open-state cryo-EM structure of human TRPV6 channel in cNW30 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

EMDB-69590:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

PDB-24kr:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

EMDB-56127:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs in complex with zanamivir
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

PDB-9tq8:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs in complex with zanamivir
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

EMDB-56598:
XBP1u-stalled RPL4 RNC in complex with NAC
Method: single particle / : Santos J, Guennigmann M, Gora RJ, Iljina M, Predin M, Kotan IE, De P, Choudhary D, Jang J, Tippmann F, Hins C, Ban N, Tans SJ, Shan S, Kramer G, Bukau B

PDB-28ln:
XBP1u-stalled RPL4 RNC in complex with NAC
Method: single particle / : Santos J, Guennigmann M, Gora RJ, Iljina M, Predin M, Kotan IE, De P, Choudhary D, Jang J, Tippmann F, Hins C, Ban N, Tans SJ, Shan S, Kramer G, Bukau B

EMDB-56607:
CryoEM structure of guanidinase from Nitrospira inopinata
Method: single particle / : Prokhorova I, Lecomte L, Papp G, Schreiner C, Djinovic-Carugo K

EMDB-72554:
Escherichia coli transcription-translation loosely coupled complex complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site - Map 1
Method: single particle / : Shandilya S, Molodtsov V, Wang C, Ebright RH

EMDB-58190:
Subtomogram average of E. scolopes ribosome
Method: subtomogram averaging / : So-Last MGF, Allegretti MA

EMDB-72646:
Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Method: single particle / : Shandilya S, Wang C, Molodtsov V, Ebright RH

PDB-9y79:
Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Method: single particle / : Shandilya S, Wang C, Molodtsov V, Ebright RH

EMDB-70380:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70381:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70382:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70383:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70384:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70386:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70387:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70388:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-70389:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

EMDB-70390:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

EMDB-70391:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9ody:
Zebrafish Abcb4 in IF-narrow conformation (IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9odz:
Zebrafish Abcb4 in IF-Wide conformation (IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe0:
Zebrafish Abcb4 in IF-Medium conformation (IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe1:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar (TQR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe2:
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar (TQR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe4:
Zebrafish Abcb4 in IF-Narrow conformation in the presence of Elacridar (ELA-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe5:
Zebrafish Abcb4 in IF-Medium conformation in the presence of Elacridar (ELA-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe6:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Elacridar (ELA-IF-Wide)
Method: single particle / : Zhan J, Xia D

PDB-9oe7:
Zebrafish Abcb4 in IF-narrow conformation in the presence of Vincristine (VCR-IF-Narrow)
Method: single particle / : Zhan J, Xia D

PDB-9oe8:
Zebrafish Abcb4 in IF-medium conformation in the presence of Vincristine (VCR-IF-Medium)
Method: single particle / : Zhan J, Xia D

PDB-9oe9:
Zebrafish Abcb4 in IF-Wide conformation in the presence of Vincristine (VCR-IF-Wide)
Method: single particle / : Zhan J, Xia D

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-56126:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

PDB-9tq7:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

EMDB-54266:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54267:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54268:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru8:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru9:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9rua:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-71823:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

PDB-9ps5:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

EMDB-58124:
In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen (mNeon-KDEL)
Method: subtomogram averaging / : Carter SD, Jensen GJ, Freyberg Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more