[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,944 items for (author: david & h)

EMDB-73688:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

PDB-9z03:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

EMDB-55120:
Focus refined 60S map of WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55121:
Focus refined 40S map of WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55126:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55215:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55216:
Focus refined 60S map of WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55217:
Focus refined 40S map of WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55218:
Focus refined 40S map of RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55219:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55220:
Focus refined 60S map of RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55226:
Focus refined 40S map of RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55227:
Focus refined 60S map of RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55228:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55300:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55301:
Focus refined 60S map of WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55302:
Focus refined 40S map of WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-58071:
Structure of the NaCT-Na-PF2 complex
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

EMDB-58072:
Structure of NaCT in NaCl
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

EMDB-58073:
Structure of NaCT in Choline Chloride
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

PDB-30ut:
Structure of the NaCT-Na-PF2 complex
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

PDB-30uu:
Structure of NaCT in NaCl
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

PDB-30uv:
Structure of NaCT in Choline Chloride
Method: single particle / : Sauer DB, Song J, Marden JJ, Wang B, Rice WJ, Wang DN

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-75152:
Nucleosome containing an 8oxoG:A at SHL-6
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-75153:
Nucleosome containing an 8oxoG:A at SHL+4
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-75154:
Nucleosome containing an 8oxoG:A at SHL+3
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-75155:
Nucleosome containing an 8oxoG:A at SHL+2
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-75156:
Nucleosome containing an 8oxoG at SHL+3
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-75157:
Nucleosome containing an 8oxoG at SHL+2
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10gj:
Nucleosome containing an 8oxoG:A at SHL-6
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10gk:
Nucleosome containing an 8oxoG:A at SHL+4
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10gl:
Nucleosome containing an 8oxoG:A at SHL+3
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10gm:
Nucleosome containing an 8oxoG:A at SHL+2
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10gn:
Nucleosome containing an 8oxoG at SHL+3
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

PDB-10go:
Nucleosome containing an 8oxoG at SHL+2
Method: single particle / : Vito AF, Ling JA, Freudenthal BD

EMDB-55789:
Structure of vaccine candidate AHSV-4 VP2 DI-mi3 nanoparticle
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

EMDB-55790:
African Horse Sickness Virus serotype 4 VP2 homotrimer
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

PDB-9tcc:
African Horse Sickness Virus serotype 4 VP2 homotrimer
Method: single particle / : Martinez-Castillo A, Aebischer A, Fu L, Breard E, Zientara S, Kortekaas J, Beer M, Abrescia NGA

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more