[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 97 items for (author: ciferri & c)

EMDB-70558:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70560:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70568:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okb:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okd:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okl:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

EMDB-72155:
DX2-CX3-RAD51 bound to DNA bubble
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q2b:
DX2-CX3-RAD51 bound to DNA bubble
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72148:
DX2-CX3-RAD51 structure in the intermediate state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72150:
DX2-CX3-RAD51 in the closed state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72152:
DX2-CX3-RAD51 in the active state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72153:
DX2-CX3 structure capping RAD51 filament
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-72154:
BCDX2-CX3-RAD51-RAD51-ssDNA supercomplex
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q23:
DX2-CX3-RAD51 structure in the intermediate state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q25:
DX2-CX3-RAD51 in the closed state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q28:
DX2-CX3-RAD51 in the active state
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q29:
DX2-CX3 structure capping RAD51 filament
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

PDB-9q2a:
BCDX2-CX3-RAD51-RAD51-ssDNA supercomplex
Method: single particle / : Koo CW, Ciferri C, Yatskevich S

EMDB-45764:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45765:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45766:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45767:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45768:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnw:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnx:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cny:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnz:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9co0:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-28776:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28777:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28778:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28779:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0p:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0q:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0r:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0s:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-7uih:
PSMD2 Structure
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

PDB-7ujd:
PSMD2 Structure bound to MC1 and Fab8/14
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-28596:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

PDB-8etr:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

EMDB-24742:
PSMD2 with bound macrocycle MC1
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-24743:
PSMD2
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-25919:
Cryo-EM structure of the human Nax channel in complex with beta3 solved in nanodiscs
Method: single particle / : Noland CL, Kschonsak M, Ciferri C, Payandeh J

EMDB-25920:
Cryo-EM structure of the human Nax channel in complex with beta3 solved in GDN
Method: single particle / : Noland CL, Kschonsak M

PDB-7tj8:
Cryo-EM structure of the human Nax channel in complex with beta3 solved in nanodiscs
Method: single particle / : Noland CL, Kschonsak M, Ciferri C, Payandeh J

PDB-7tj9:
Cryo-EM structure of the human Nax channel in complex with beta3 solved in GDN
Method: single particle / : Noland CL, Kschonsak M, Ciferri C, Payandeh J

EMDB-25685:
CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with neutralizing fabs 2C12, 7I13 and 13H11
Method: single particle / : Kschonsak M, Johnson MC

EMDB-25686:
CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with THBD and neutralizing fabs MSL-109 and 13H11
Method: single particle / : Kschonsak M, Johnson MC

EMDB-25687:
CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with NRP2 and neutralizing fabs 8I21 and 13H11
Method: single particle / : Kschonsak M, Johnson MC

EMDB-25688:
CryoEM structure of 2x HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with NRP2 and 2x neutralizing fabs 8I21 and 13H11
Method: single particle / : Kschonsak M, Johnson MC, Schelling R, Green EM, Rouge L, Ho H, Patel N, Kilic C, Kraft E, Arthur CP, Rohou AL, Comps-Agrar L, Martinez-Martin N, Perez L, Payandeh J, Ciferri C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more