[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 953 items for (author: chiu & w)

EMDB-64592:
The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (JN.1) in all-RBD-up conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64593:
The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (Delta) in all-RBD-up conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64594:
The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.5) in all-RBD-up conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64595:
The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.2) in all-RBD-up conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64596:
The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.1) in all-RBD-up conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64597:
The local refine of 3D reconstruction of the complex formed by SARS-CoV2 BA.1 spike glycoprotein and a single-domain antibody
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64598:
Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present all down conformation.
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64599:
Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present two up and one down conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-64600:
Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present one up and two down conformation
Method: single particle / : Wu B, Rao G, Cao S, Gong R

EMDB-70096:
EcAvs2 bound to phage PhiV-1 terminase, overall C4 reconstruction
Method: single particle / : Wilkinson ME, Gao A, Strecker J, Makarova KS, Macrae RK, Koonin EV, Zhang F

EMDB-70097:
EcAvs2 bound to phage PhiV-1 terminase, symmetry-expanded C1 refinement of TPR-terminase domain
Method: single particle / : Wilkinson ME, Gao A

EMDB-49886:
Cryo-ET map of the VZV capsid 3-fold axis.
Method: subtomogram averaging / : Oliver SL, Chen M

EMDB-49465:
Reconstruction of the intranuclear varicella-zoster virus capsid.
Method: subtomogram averaging / : Oliver SL

EMDB-49466:
Reconstruction of the varicella-zoster virus capsid vertex.
Method: subtomogram averaging / : Olver SL

EMDB-49467:
Reconstruction of the intracellular varicella-zoster virus capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49468:
VZV portal vertex cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49469:
VZV portal cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49470:
Reconstruction of intracellular varicella zoster virus CAI-capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49471:
Reconstruction of the portal vertex from intracellular varicella-zoster virus CAI-capsids.
Method: subtomogram averaging / : Oliver SL

EMDB-49472:
Reconstruction of the varicella-zoster virus C-capsid with the portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-49473:
VZV C-capsid portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-49344:
In situ structure of the cardiac thin filament without troponin from isogenic control human induced pluripotent stem cell-derived cardiomyocytes (AICS-0097-113 ACTN2-mEGFP MYH7(WT/WT))
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49345:
In situ structure of the cardiac thin filament without troponin from untreated human induced pluripotent stem cell-derived cardiomyocytes (SCVI-273)
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49346:
In situ structure of the cardiac thin filament without troponin from MYH7(WT/G256E) human induced pluripotent stem cell-derived cardiomyocytes (AICS-0097-141 ACTN2-mEGFP MYH7(WT/G256E))
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49348:
In situ structure of the cardiac thin filament without troponin from doxorubicin-treated human induced pluripotent stem cell-derived cardiomyocytes (SCVI-273)
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49349:
In situ structure of the cardiac thin filament with troponin from isogenic control human induced pluripotent stem cell-derived cardiomyocytes (AICS-0097-113 ACTN2-mEGFP MYH7(WT/WT))
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49350:
In situ structure of the cardiac thin filament with troponin from untreated human induced pluripotent stem cell-derived cardiomyocytes (SCVI-273)
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49351:
In situ structure of the cardiac thin filament with troponin from MYH7(WT/G256E) human induced pluripotent stem cell-derived cardiomyocytes (AICS-0097-141 ACTN2-mEGFP MYH7(WT/G256E))
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-49352:
ln situ structure of the cardiac thin filament with troponin from doxorubicin-treated human induced pluripotent stem cell-derived cardiomyocytes (SCVI-273)
Method: subtomogram averaging / : Woldeyes RA, Chiu W

EMDB-63364:
Integrin alpha-v beta-3 in complex with Trimucrin
Method: single particle / : Wang YT, Chuang WJ

PDB-9lt3:
Integrin alpha-v beta-3 in complex with Trimucrin
Method: single particle / : Wang YT, Chuang WJ

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-63216:
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nanobody 1G9
Method: single particle / : Wang QQ, Ke XL, Li ET, Hong DX, Li HX, Cheng ZK, Zhang JC, Jin TC, Shu B, Chiu S

PDB-9lm5:
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nanobody 1G9
Method: single particle / : Wang QQ, Ke XL, Li ET, Hong DX, Li HX, Cheng ZK, Zhang JC, Jin TC, Shu B, Chiu S

EMDB-63217:
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nanobody 1D8
Method: single particle / : Wang QQ, Ke XL, Li ET, Hong DX, Li HX, Cheng ZK, Zhang JC, Jin TC, Shu B, Chiu S

PDB-9lm6:
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nanobody 1D8
Method: single particle / : Wang QQ, Ke XL, Li ET, Hong DX, Li HX, Cheng ZK, Zhang JC, Jin TC, Shu B, Chiu S

EMDB-70242:
Cryo-EM structure of CLC-ec1 at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70243:
Cryo-EM structure of CLC-ec1 at pH 4.0
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70244:
Cryo-EM structure of CLC-ec1 at pH 3.0
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70245:
Cryo-EM structure of CLC-ec1 K131A at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o95:
Cryo-EM structure of CLC-ec1 at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o96:
Cryo-EM structure of CLC-ec1 at pH 4.0
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o97:
Cryo-EM structure of CLC-ec1 at pH 3.0
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o98:
Cryo-EM structure of CLC-ec1 K131A at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-64647:
Cryo-EM Structure of the Vaccinia Virus Entry/Fusion Complex (EFC) Lacking the F9 Subunit
Method: single particle / : Wang CH, Lin CSH, Chang W

EMDB-64648:
Cryo-EM Structure of the Vaccinia Virus Entry/Fusion Complex (EFC) Including the F9 Subunit
Method: single particle / : Wang CH, Lin CSH, Chang W

PDB-9uzo:
Cryo-EM Structure of the Vaccinia Virus Entry/Fusion Complex (EFC) Lacking the F9 Subunit
Method: single particle / : Wang CH, Lin CSH, Chang W

PDB-9uzp:
Cryo-EM Structure of the Vaccinia Virus Entry/Fusion Complex (EFC) Including the F9 Subunit
Method: single particle / : Wang CH, Lin CSH, Chang W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more