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TitleA C-based single-domain antibody broadly neutralizes SARS-CoV-2 and its variants through novel recognition of conserved regions in RBD
Journal, issue, pagesTo Be Published
Publish dateMay 15, 2024 (structure data deposition date)
AuthorsWu B / Rao G / Zhang H / Yi Y / Zhao S / Qin Y / Li M / Chen L / Zhang Z / Mu J ...Wu B / Rao G / Zhang H / Yi Y / Zhao S / Qin Y / Li M / Chen L / Zhang Z / Mu J / Chiu S / Cao S / Gong R
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.51 - 4.22 Å
Structure data

EMDB-60186: spike glycoprotein of SARS-CoV2 EG.5
Method: EM (single particle) / Resolution: 3.68 Å

EMDB-60187: Spike glycoprotein of SARS-CoV2 EG.5.1
Method: EM (single particle) / Resolution: 2.51 Å

EMDB-60188: Spike glycoprotein of SARS-CoV2 BA.1
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-64592: The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (JN.1) in all-RBD-up conformation
Method: EM (single particle) / Resolution: 3.14 Å

EMDB-64593: The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (Delta) in all-RBD-up conformation
Method: EM (single particle) / Resolution: 3.12 Å

EMDB-64594: The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.5) in all-RBD-up conformation
Method: EM (single particle) / Resolution: 4.22 Å

EMDB-64595: The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.2) in all-RBD-up conformation
Method: EM (single particle) / Resolution: 3.65 Å

EMDB-64596: The binding of a C-based single-domain antibody stabilizes spikes of SARS-CoV2 (BA.1) in all-RBD-up conformation
Method: EM (single particle) / Resolution: 3.4 Å

64597

9uxs

EMDB-64597, PDB-9uxs:
The local refine of 3D reconstruction of the complex formed by SARS-CoV2 BA.1 spike glycoprotein and a single-domain antibody
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-64598: Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present all down conformation.
Method: EM (single particle) / Resolution: 3.03 Å

EMDB-64599: Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present two up and one down conformation
Method: EM (single particle) / Resolution: 3.05 Å

EMDB-64600: Three RBD domains of the spike protein of SARS-CoV-2 JN.1 present one up and two down conformation
Method: EM (single particle) / Resolution: 2.78 Å

Source
  • severe acute respiratory syndrome coronavirus 2
  • homo sapiens (human)
KeywordsVIRAL PROTEIN/IMMUNE SYSTEM / SARS-CoV2 / RBD / Single-domain antibody / VIRAL PROTEIN-IMMUNE SYSTEM complex

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