[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 247 items for (author: chen & yt)

EMDB-70888:
Structure of Geobacillus stearothermophilus RNase P ribozyme
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70891:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70892:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70893:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70896:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70897:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+
Method: single particle / : Lee YT, Skeparnias I, Stagno JR, Wang YX

EMDB-70933:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70935:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70936:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70994:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70995:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 2)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70996:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70937:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (Consensus)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70940:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with loop-back 5' leader
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-65107:
Raw consensus map of Type II-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65108:
Type I-A CRISPR integrase prespacer catching complex, State II
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65109:
Type II-A CRISPR integrase pre-integration complex
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-63364:
Integrin alpha-v beta-3 in complex with Trimucrin
Method: single particle / : Wang YT, Chuang WJ

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-60926:
Structure of Full-Length AsfvPrimPol with polyT DNA
Method: single particle / : Xu KE, Chen YT

EMDB-60945:
Structure of apo AsfvPrimPol with dodecamer
Method: single particle / : Xu KE, Chen YT

EMDB-52275:
Structure of Ba1Cas12a3 binary complex
Method: single particle / : Yuan B, Heinz DW

EMDB-52285:
Structure of tRNA bound Ba1Cas12a3
Method: single particle / : Yuan B, Heinz DW

EMDB-52286:
Structure of cleaved tRNA fragment bound Ba1Cas12a3
Method: single particle / : Yuan B, Heinz DW

EMDB-52287:
Structure of Ba1Cas12a3 ternary complex
Method: single particle / : Yuan B, Heinz DW

PDB-9hlx:
Structure of Ba1Cas12a3 binary complex
Method: single particle / : Yuan B, Heinz DW

PDB-9hm4:
Structure of tRNA bound Ba1Cas12a3
Method: single particle / : Yuan B, Heinz DW

PDB-9hm5:
Structure of cleaved tRNA fragment bound Ba1Cas12a3
Method: single particle / : Yuan B, Heinz DW

PDB-9hm6:
Structure of Ba1Cas12a3 ternary complex
Method: single particle / : Yuan B, Heinz DW

EMDB-63118:
structure of phage T4 topoisomerase II central domain
Method: single particle / : Chen YT, Xin YH, Xian RQ

EMDB-61683:
structure of phage T4 topoisomerase II central domain bound with DNA
Method: single particle / : Chen YT, Xin YH, Xian RQ

EMDB-61621:
Bacteriophage T4 topoisomerse II bound with a T-segment DNA
Method: single particle / : Xin YH, Chen YT

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9m3f:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9vg7:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

PDB-9pqd:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-60907:
Integrin alpha-v beta-3 in complex with rhodostomin
Method: single particle / : Wang YT, Chuang WJ

EMDB-60835:
Structure of rat TRPV1 in complex with PSFL426-S5
Method: single particle / : Chen X, Yu Y

EMDB-39984:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39990:
Cryo-EM structure of Mycobacteriophage Douge genome-free vertex (gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-60714:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector-vertex (gp5, gp8, gp9, gp10, gp12, gp13 and gp113
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more