[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: charles & ej)

EMDB-61190:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61205:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61206:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-47134:
CHIP U-box dimer bound to Fab 2F1
Method: single particle / : Unnikrishnan A, Southworth D

EMDB-40821:
Bovine multidrug resistance protein 4 (MRP4) E1202Q mutant bound to ATP in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40826:
Bovine multidrug resistance protein 4 (MRP4) bound to DHEA-S in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40827:
Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E1 in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40828:
Inward-facing narrow conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40829:
Inward-facing wide conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40830:
Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E2 in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8swn:
Bovine multidrug resistance protein 4 (MRP4) E1202Q mutant bound to ATP in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8sx7:
Bovine multidrug resistance protein 4 (MRP4) bound to DHEA-S in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8sx8:
Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E1 in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8sx9:
Inward-facing narrow conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8sxa:
Inward-facing wide conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

PDB-8sxb:
Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E2 in MSP lipid nanodisc
Method: single particle / : Pourmal S, Stroud RM

EMDB-40856:
Single particle reconstruction of the human LINE-1 ORF2p without substrate (apo)
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40858:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40859:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxt:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxu:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-29281:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-29282:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flk:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flm:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-25132:
Androgen receptor bound to DNA - Entrenched state
Method: single particle / : Wasmuth EV, Vanden Broeck A, Klinge S, Sawyers CL

EMDB-25133:
Androgen receptor bound to DNA - Splayed state
Method: single particle / : Wasmuth EV, Vanden Broeck A, Klinge S, Sawyers CL

EMDB-25134:
Androgen receptor bound to DNA - Divorced state
Method: single particle / : Wasmuth EV, Vanden Broeck A, Klinge S, Sawyers CL

EMDB-21812:
Cryo-EM of Form 1 related peptide filament, 15-10-3
Method: helical / : Wang F, Gnewou OM

EMDB-21813:
Cryo-EM of Form 1 related peptide filament, 29-24-3
Method: helical / : Wang F, Gnewou OM

EMDB-21814:
Cryo-EM of Form 1 related peptide filament, 36-31-3-RD
Method: helical / : Wang F, Gnewou OM

EMDB-21815:
Cryo-EM of Form 1 related peptide filament, 36-31-3
Method: helical / : Wang F, Gnewou OM

EMDB-21816:
Cryo-EM of Form 2 like peptide filament, 29-20-2
Method: helical / : Wang F, Gnewou OM

EMDB-21817:
Cryo-EM of Form 2 peptide filament
Method: helical / : Wang F, Gnewou OM

EMDB-21818:
Cryo-EM of Form 2 like peptide filament, Form2a
Method: helical / : Wang F, Beltran LC

PDB-6wkx:
Cryo-EM of Form 1 related peptide filament, 15-10-3
Method: helical / : Wang F, Gnewou OM, Egelman EH, Conticello VP

PDB-6wky:
Cryo-EM of Form 1 related peptide filament, 29-24-3
Method: helical / : Wang F, Gnewou OM, Egelman EH, Conticello VP

PDB-6wl0:
Cryo-EM of Form 1 related peptide filament, 36-31-3-RD
Method: helical / : Wang F, Gnewou OM, Su Z, Egelman EH, Conticello VP

PDB-6wl1:
Cryo-EM of Form 1 related peptide filament, 36-31-3
Method: helical / : Wang F, Gnewou OM, Modlin C, Egelman EH, Conticello VP

PDB-6wl7:
Cryo-EM of Form 2 like peptide filament, 29-20-2
Method: helical / : Wang F, Gnewou OM, Modlin C, Egelman EH, Conticello VP

PDB-6wl8:
Cryo-EM of Form 2 peptide filament
Method: helical / : Wang F, Gnewou OM, Xu C, Su Z, Egelman EH, Conticello VP

PDB-6wl9:
Cryo-EM of Form 2 like peptide filament, Form2a
Method: helical / : Wang F, Beltran LC, Gnewou OM, Egelman EH, Conticello VP

EMDB-20503:
Subtomogram average of a purified Leptospira biflexa -fcpB mutant flagellum
Method: subtomogram averaging / : Brady MR, Gibson KH, Sindelar CV

EMDB-20504:
10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging
Method: subtomogram averaging / : Gibson KH, Sindelar CV

PDB-6pwb:
Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging
Method: subtomogram averaging / : Gibson KH, Sindelar CV, Trajtenberg F, Buschiazzo A, San Martin F, Mechaly A

EMDB-7321:
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Method: subtomogram averaging / : Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

EMDB-4089:
The human 26S Proteasome at 6.8 Ang.
Method: single particle / : Schweitzer A, Beck F

PDB-5ln3:
The human 26S Proteasome at 6.8 Ang.
Method: single particle / : Schweitzer A, Beck F, Sakata E, Unverdorben P

PDB-5fm1:
Structure of gamma-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure
Method: helical / : Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A

PDB-5flz:
Cryo-EM structure of gamma-TuSC oligomers in a closed conformation
Method: helical / : Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more