[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 39 items for (author: bowden & ta)

EMDB-19525:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

PDB-8rvn:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

EMDB-15898:
Recombinant Mayaro virus-like particle
Method: single particle / : Kim YC, Song X, Huiskonen JT

EMDB-14866:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=4 VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

EMDB-14868:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=3* VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

PDB-7zq8:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=4 VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

PDB-7zqa:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=3* VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

EMDB-15073:
Rabies virus glycoprotein in complex with Fab fragments of 17C7 and 1112-1 neutralizing antibodies
Method: single particle / : Ng WM, Fedosyuk S, English S, Augusto G, Berg A, Thorley L, Haselon AS, Segireddy RR, Bowden TA, Douglas AD

EMDB-12543:
Hantaan virus-like particle glycoprotein lattice.
Method: subtomogram averaging / : Stass R, Rissanen I, Bowden TA, Huiskonen JT

EMDB-12544:
Hantaan virus-like particle glycoprotein spike in complex with Fab fragment HTN-Gn1.
Method: subtomogram averaging / : Stass R, Rissanen I, Bowden TA, Huiskonen JT

PDB-7nrh:
Hantaan virus glycoprotein (Gn) in complex with Fab fragment HTN-Gn1.
Method: subtomogram averaging / : Stass R, Rissanen I, Bowden TA, Huiskonen JT

EMDB-11964:
Puumala virus-like particle glycoprotein spike in complex with fab fragment P-4G2.
Method: subtomogram averaging / : Rissanen I, Stass R, Huiskonen JT, Bowden TA

EMDB-11965:
A reconstruction of Puumala virus-like particle glycoprotein spike lattice in the presence of fab 4G2 which is absent from the reconstruction.
Method: subtomogram averaging / : Rissanen I, Stass R, Huiskonen JT, Bowden TA

EMDB-11966:
Puumala virus-like particle glycoprotein lattice.
Method: subtomogram averaging / : Rissanen I, Stass R, Huiskonen JT, Bowden TA

PDB-7b09:
Puumala virus glycoprotein (Gc) in complex with fab fragment P-4G2.
Method: subtomogram averaging / : Rissanen I, Stass R, Huiskonen JT, Bowden TA

PDB-7b0a:
Puumala virus-like particle glycoprotein spike and lattice contacts model.
Method: subtomogram averaging / : Rissanen I, Stass R, Huiskonen JT, Bowden TA

EMDB-4209:
Subtomogram average of Rift Valley fever virus hexamer at pH 5.0 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4197:
Icosahedral reconstruction of Rift Valley fever virus virion
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4198:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 1
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4199:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 2
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4200:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 3
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4201:
Localized reconstruction of the Rift Valley fever virus glycoprotein pentamer
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4202:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4203:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4204:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4205:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4206:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4207:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4208:
Subtomogram average of Rift Valley fever virus pentamer at pH 5.0 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4210:
Subtomogram average of Rift Valley fever virus pentamer at pH 5.0 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4211:
Subtomogram average of Rift Valley fever virus hexamer at pH 5.0 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-3364:
Sub-tomogram averaging of Tula virus glycoprotein spike
Method: subtomogram averaging / : Li S, Rissanen I, Zeltina A, Hepojoki J, Raghwani J, Harlos K, Pybus OG, Huiskonen JT, Bowden TA

PDB-5ft2:
Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH 5
Method: electron tomography / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-3290:
Sub-tomogram averaging of Lassa virus glycoprotein spike from fixed virions
Method: subtomogram averaging / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-3291:
Sub-tomogram averaging of Lassa virus glycoprotein spike from virus-like particles at pH 7
Method: subtomogram averaging / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-3292:
Sub-tomogram averaging of Lassa virus glycoprotein spike from virus-like particles at pH 5
Method: subtomogram averaging / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-3293:
Sub-tomogram averaging of Lassa virus glycoprotein spike from virus-like particles at pH 5 in complex with purified LAMP1 fragment
Method: subtomogram averaging / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-3294:
Sub-tomogram averaging of Lassa virus glycoprotein spike from virus-like particles at pH 3
Method: subtomogram averaging / : Li S, Zhaoyang S, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT

EMDB-2352:
Structure of the Bunyamwera virus glycoprotein spike determined by electron cryo-tomography and sub-volume averaging
Method: subtomogram averaging / : Bowden TA, Bitto D, McLees A, Yeromonahos C, Elliott RM, Huiskonen JT

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more