[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: beatrix & b)

EMDB-16182:
Yeast 80S ribosome in complex with Map1 (conformation 1)
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

EMDB-16191:
Yeast 80S ribosome in complex with Map1 (conformation 2)
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PDB-8bqd:
Yeast 80S ribosome in complex with Map1 (conformation 1)
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PDB-8bqx:
Yeast 80S ribosome in complex with Map1 (conformation 2)
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

EMDB-29023:
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29024:
Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29025:
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

PDB-8fed:
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

PDB-8fee:
Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

PDB-8fef:
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29228:
Local refinement of MceG in Msmeg Mce1 transporter (Map0a)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29229:
Local refinement of YrbE and MCE ring in Msmeg Mce1 transporter (Map0b)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29230:
Local refinement of MCE ring and needle in Msmeg Mce1 transporter (Map0c)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29231:
Local refinement of MCE needle and portal in Msmeg Mce1 transporter (Map0d)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29232:
Raw, consensus refinement of Msmeg Mce1 transporter (Map0e)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29233:
Local refinement of MceG in Msmeg Mce1-LucB complex (Map1a)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29234:
Local refinement of YrbE, MCE ring, LucB in Msmeg Mce1-LucB complex (Map1b)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29235:
Local refinement of MCE ring and needle in Msmeg Mce1-LucB complex (Map1c)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29236:
Local refinement of MCE needle and portal in Msmeg Mce1-LucB complex (Map1d)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29237:
Raw, consensus refinement of Msmeg Mce1-LucB complex (Map1e)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29238:
Local refinement of MceG in Msmeg Mce1 transporter in the absence of LucB (Map2a)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29239:
Local refinement of YrbE and MCE ring in Msmeg Mce1 transporter in the absence of LucB (Map2b)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29240:
Local refinement of MCE ring and needle in Msmeg Mce1 transporter in the absence of LucB (Map2c)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29241:
Local refinement of MCE needle and portal in Msmeg Mce1 transporter in the absence of LucB (Map2d)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-29242:
Raw, consensus refinement of Msmeg Mce1 transporter in the absence of LucB (Map2e)
Method: single particle / : Chen J, Bhabha G, Ekiert DC

EMDB-16086:
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

EMDB-16090:
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PDB-8bip:
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PDB-8bjq:
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Method: single particle / : Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

EMDB-11774:
Cryo-EM structure of the signal sequence-engaged post-translational Sec translocon
Method: single particle / : Weng TH, Beatrix B

EMDB-11775:
Cryo-EM structure of the apo state post-translational Sec translocon
Method: single particle / : Weng TH, Beatrix B, Berninghausen O, Becker T, Cheng J, Beckmann R

PDB-7aft:
Cryo-EM structure of the signal sequence-engaged post-translational Sec translocon
Method: single particle / : Weng TH, Beatrix B, Berninghausen O, Becker T, Cheng J, Beckmann R

EMDB-4729:
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Method: single particle / : Shanmuganathan V, Cheng J, Berninghausen O, Beckmann R

EMDB-4735:
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Method: single particle / : Shanmuganathan V, Cheng J, Braunger K, Berninghausen O, Beatrix B, Beckmann R

EMDB-4737:
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Method: single particle / : Shanmuganathan V, Cheng J

EMDB-4745:
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Method: single particle / : Shanmuganathan V, Cheng J

PDB-6r5q:
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Method: single particle / : Shanmuganathan V, Cheng J, Berninghausen O, Beckmann R

PDB-6r6g:
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Method: single particle / : Shanmuganathan V, Cheng J, Braunger K, Berninghausen O, Beatrix B, Beckmann R

PDB-6r6p:
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Method: single particle / : Shanmuganathan V, Cheng J, Berninghausen O, Beckmann R

PDB-6r7q:
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Method: single particle / : Shanmuganathan V, Cheng J, Braunger K, Berninghausen O, Beatrix B, Beckmann R

EMDB-4474:
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Method: single particle / : Tesina P, Heckel E, Cheng J, Buschauer R, Kater L, Berninghausen O, Becker T, Beckmann R

PDB-6q8y:
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Method: single particle / : Tesina P, Heckel E, Cheng J, Buschauer R, Kater L, Berninghausen O, Becker T, Beckmann R

EMDB-0201:
Cryo-EM structure of the ribosome-NatA complex
Method: single particle / : Knorr AG, Becker T, Berninghausen O, Beckmann R

EMDB-0202:
Cryo-EM structure of the ribosome-NatA complex
Method: single particle / : Knorr AG, Becker T, Berninghausen O, Beckmann R

EMDB-0203:
Cryo-EM structure of a RNaseI treated 80S ribosome
Method: single particle / : Knorr AG, Berninghausen O, Becker T, Beckmann R

PDB-6hd5:
Cryo-EM structure of the ribosome-NatA complex
Method: single particle / : Knorr AG, Becker T, Beckmann R

PDB-6hd7:
Cryo-EM structure of the ribosome-NatA complex
Method: single particle / : Knorr AG, Becker T, Beckmann R

PDB-4urd:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

EMDB-2711:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

EMDB-2695:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more