[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,138 items for (author: ando & y)

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-70642:
L-cluster free apo-NifEN expressed in E. coli
Method: single particle / : Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

PDB-9onj:
L-cluster free apo-NifEN expressed in E. coli
Method: single particle / : Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

EMDB-70643:
L-cluster inward bound holo-NifEN expressed in E. coli
Method: single particle / : Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

PDB-9onk:
L-cluster inward bound holo-NifEN expressed in E. coli
Method: single particle / : Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

EMDB-73406:
Negative stained A. vinelandii NifEN-B' fusion
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-73407:
Negative stained A. vinelandii NifEN/NifH ADPxAIF4- stabilized complex
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-48337:
FnoCas12a bridge helix variant state 1
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48338:
FnoCas12a bridge helix variant state 2
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48339:
FnoCas12a bridge helix variant state 3
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48340:
FnoCas12a bridge helix variant state 4a
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48341:
FnoCas12a bridge helix variant state 4b
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkt:
FnoCas12a bridge helix variant state 1
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mku:
FnoCas12a bridge helix variant state 2
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkv:
FnoCas12a bridge helix variant state 3
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkw:
FnoCas12a bridge helix variant state 4a
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkx:
FnoCas12a bridge helix variant state 4b
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

PDB-9oox:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-75024:
Cryo-EM structure of the human BK channel bound to the agonist NS1619
Method: single particle / : Gonzalez-Sanabria N, Contreras GF, Perozo E, Latorre R

PDB-10ad:
Cryo-EM structure of the human BK channel bound to the agonist NS1619
Method: single particle / : Gonzalez-Sanabria N, Contreras GF, Perozo E, Latorre R

EMDB-63315:
The asymmetric structure of MdtF from E.coli.
Method: single particle / : Dutta S, Padmanaban S, Fernando Rencilin C

EMDB-63321:
Cryo-EM map of MdtB from E.coli.
Method: single particle / : Dutta S, Padmanaban S, Fernando Rencilin C

EMDB-65980:
CryoEM map of symmetric MdtF
Method: single particle / : Dutta S, Padmanaban S, Fernando Rencilin C

EMDB-66716:
C3 map of MdtF from 200kV Talos Arctica dataset
Method: single particle / : Dutta S, Padmanaban S, Fernando Rencilin C

PDB-9lyj:
Cryo-EM structure of MdtF
Method: single particle / : Dutta S, Padmanaban S, Fernando RC

PDB-9lyq:
Structure of RND efflux pump MdtB
Method: single particle / : Dutta S, Padmanaban S, Fernando RC

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-53417:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

PDB-9qwn:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

EMDB-52659:
A subunit of alpha-1 antitrypsin polymers isolated from ZZ explant liver tissue and decorated with conformationally nonselective Fab 9C5
Method: single particle / : Aldobiyan IF, Irving JA, Orlova EV, Lomas DA

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-64947:
Cryo-EM structure of the human kappa opioid receptor signaling complex bound to compound A
Method: single particle / : Suno-Ikeda C, Sugita Y, Hirose M, Suno R

EMDB-65622:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9v6o:
Cryo-EM structure of human kappa opioid receptor - G protein signaling complex bound with nalfurafine.
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9w49:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

EMDB-54584:
Arabidopsis thaliana TPLATE complex negative stain EM map
Method: single particle / : Kraus JM, Van Damme D, Pleskot R, Neubergerova M

EMDB-64554:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64899:
human mitoirbosome trapped by retapamulin, global map
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64900:
human mitoirbosome trapped by retapamulin, focused map
Method: single particle / : Ando Y, Nureki O, Itoh Y

PDB-9uwh:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-63608:
Arabidopsis thaliana CDC48A, nucleotide-free (Apo)
Method: single particle / : Huntington B, Arold ST

EMDB-63609:
Arabidopsis thaliana CDC48A bound to AMP-PNP (AMPPNP-Up)
Method: single particle / : Huntington B, Arold ST

EMDB-63610:
Arabidopsis thaliana CDC48A bound to AMP-PNP (AMPPNP-Down)
Method: single particle / : Huntington B, Arold ST

EMDB-63611:
Arabidopsis thaliana CDC48A bound to ADP
Method: single particle / : Huntington B, Arold ST

EMDB-63612:
Arabidopsis thaliana CDC48A-NPL4-UFD1B (AtCNU) complex
Method: single particle / : Huntington B, Arold ST

PDB-9m3v:
Arabidopsis thaliana CDC48A, nucleotide-free (Apo)
Method: single particle / : Huntington B, Arold ST

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more