[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: alushin & ga)

EMDB-25494:
T-Plastin-F-actin complex, parallel bundled state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

EMDB-25495:
T-Plastin-F-actin complex, anti-parallel bundled state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

EMDB-25496:
T-Plastin-F-actin complex, pre-bundling intermediate state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

PDB-7sx8:
T-Plastin-F-actin complex, parallel bundled state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

PDB-7sx9:
T-Plastin-F-actin complex, anti-parallel bundled state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

PDB-7sxa:
T-Plastin-F-actin complex, pre-bundling intermediate state
Method: single particle / : Mei L, Reynolds MJ, Alushin GM

EMDB-24323:
T-Plastin-F-actin complex
Method: helical / : Mei L, Alushin GM

PDB-7r94:
T-Plastin-F-actin complex
Method: helical / : Mei L, Alushin GM

EMDB-7115:
Structure of bare actin filament
Method: helical / : Gurel PS, Alushin GA

EMDB-7116:
CryoEM structure of MyosinVI-actin complex in the rigor (nucleotide-free) state
Method: helical / : Gurel PS, Alushin GA

EMDB-6347:
Cryo-EM structure of GTPgammaS microtubule co-polymerized with EB3
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6348:
Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 and decorated with kinesin
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6349:
Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 (merged dataset with and without kinesin bound)
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6350:
Cryo-EM structure of GMPCPP-microtubule co-polymerized with EB3
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6351:
Cryo-EM structure of GDP-microtubule co-polymerized with EB3
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6352:
Cryo-EM structure of GMPCPP-microtubule (14 protofilaments) decorated with kinesin
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6353:
Cryo-EM structure of dynamic GDP-microtubule (14 protofilaments) decorated with kinesin
Method: helical / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6354:
Asymmetric (C1) reconstruction of EB3-bound microtubule (merged dataset containing tubulin bound to GTPgammaS, GMPCPP and GDP)
Method: single particle / : Zhang R, Alushin GM, Brown A, Nogales E

EMDB-6355:
Asymmetric (C1) reconstruction of GMPCPP-microtubule (13 protofilaments) decorated with kinesin
Method: single particle / : Zhang R, Alushin GM, Brown A, Nogales E

PDB-3jak:
Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 (merged dataset with and without kinesin bound)
Method: helical / : Zhang R, Nogales E

PDB-3jal:
Cryo-EM structure of GMPCPP-microtubule co-polymerized with EB3
Method: helical / : Zhang R, Nogales E

PDB-3jar:
Cryo-EM structure of GDP-microtubule co-polymerized with EB3
Method: helical / : Zhang R, Nogales E

PDB-3jas:
Cryo-EM structure of dynamic GDP-microtubule (14 protofilaments) decorated with kinesin
Method: helical / : Zhang R, Nogales E

PDB-3jat:
Cryo-EM structure of GMPCPP-microtubule (14 protofilaments) decorated with kinesin
Method: helical / : Zhang R, Nogales E

PDB-3jaw:
Atomic model of a microtubule seam based on a cryo-EM reconstruction of the EB3-bound microtubule (merged dataset containing tubulin bound to GTPgammaS, GMPCPP, and GDP)
Method: helical / : Zhang R, Nogales E

EMDB-5895:
Cryo EM density of microtubules stabilized by GMPCPP
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

EMDB-5896:
Cryo EM density of GDP-bound dynamic microtubules
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

EMDB-5897:
Cryo EM density of microtubules stabilized by taxol
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

EMDB-5898:
Cryo EM density of microtubules stabilized by GMPCPP, without kinesin
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

EMDB-5899:
Cryo EM density of microtubules bound to GDP, no kinesin
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6e:
Energy minimized average structure of Microtubules stabilized by GmpCpp
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6f:
Minimized average structure of GDP-bound dynamic microtubules
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6g:
Minimized average structure of microtubules stabilized by taxol
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

EMDB-5489:
Improved Reconstruction of the Human Ndc80 Bonsai Decorated Microtubule
Method: helical / : Alushin GM, Musinipally V, Matson D, Tooley J, Stukenberg PT, Nogales E

EMDB-5490:
Reconstruction of the Wild-type Ndc80 Bonsai Decorated Microtubule on CCD for Difference Map Calculation
Method: helical / : Alushin GM, Musinipally V, Matson D, Tooley J, Stukenberg PT, Nogales E

EMDB-5491:
Reconstruction of the Ndc80 Bonsai 4D Mutant Decorated Microtubule on CCD for Difference Map Calculation
Method: helical / : Alushin GM, Musinipally V, Matson D, Tooley J, Stukenberg PT, Nogales E

EMDB-5492:
Reconstruction of the Ndc80 Bonsai Delta 40 Decorated Microtubule on CCD for Difference Map Calculation
Method: helical / : Alushin GM, Musinipally V, Matson D, Tooley J, Stukenberg PT, Nogales E

EMDB-5493:
Reconstruction of the Microtubule Alone on CCD for Difference Map Calculation
Method: helical / : Alushin GM, Musinipally V, Matson D, Tooley J, Stukenberg PT, Nogales E

PDB-3iz0:
Human Ndc80 Bonsai Decorated Microtubule
Method: helical / : Alushin GM, Ramey VH, Pasqualato S, Ball DA, Grigorieff N, Musacchio A, Nogales E

EMDB-5223:
Human Ndc80 Bonsai Decorated Microtubule
Method: helical / : Alushin GM, Ramey VH, Pasqualato S, Ball DA, Grigorieff N, Musacchio A, Nogales E

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more