[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 104 items for (author: accardi & a)

EMDB-44744:
Structure of human Xk-related protein 4
Method: single particle / : Chakraborty S, Accardi A

PDB-9boj:
Structure of human Xk-related protein 4
Method: single particle / : Chakraborty S, Accardi A

EMDB-46416:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46418:
Ca2+ free hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46419:
Ca2+ free hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46421:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46423:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46425:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46467:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent- Class 2
Method: single particle / : Agarwal S, Nimigean C

EMDB-46468:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-Class 3
Method: single particle / : Agarwal S, Nimigean C

PDB-9czh:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

PDB-9czj:
Ca2+ free hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

PDB-9czk:
Ca2+ free hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

PDB-9czm:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

PDB-9czo:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

PDB-9czq:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

PDB-9d18:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-conformation 2 of inactivating domain
Method: single particle / : Agarwal S, Nimigean C

PDB-9d19:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-conformation 3 of inactivating domain
Method: single particle / : Agarwal S, Nimigean C

EMDB-42116:
HCN1 complex with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-42117:
HCN1 nanodisc
Method: single particle / : Kim ED, Nimigean CM

EMDB-44425:
HCN1 M305L with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-44426:
HCN1 M305L holo
Method: single particle / : Kim ED, Nimigean CM

PDB-8uc7:
HCN1 complex with propofol
Method: single particle / : Kim ED, Nimigean CM

PDB-8uc8:
HCN1 nanodisc
Method: single particle / : Kim ED, Nimigean CM

PDB-9bc6:
HCN1 M305L with propofol
Method: single particle / : Kim ED, Nimigean CM

PDB-9bc7:
HCN1 M305L holo
Method: single particle / : Kim ED, Nimigean CM

EMDB-41479:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpo:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-41453:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

EMDB-41454:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

EMDB-41455:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

EMDB-41457:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state) (consensus map)
Method: single particle / : Feng Z, Accardi A

EMDB-41458:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)(local refined monomer map)
Method: single particle / : Feng Z, Accardi A

EMDB-41477:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the absence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-41478:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (intermediate state)
Method: single particle / : Feng Z, Accardi A

EMDB-41480:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-41481:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41482:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (short TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41483:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (bent TM6)
Method: single particle / : Feng Z, Accardi A

EMDB-41484:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6/short TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8toi:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

PDB-8tok:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

PDB-8tol:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (open state)
Method: single particle / : Feng Z, Accardi A

PDB-8tpm:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the absence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpn:
nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (intermediate state)
Method: single particle / : Feng Z, Accardi A

PDB-8tpp:
nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-8tpq:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tpr:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (short TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tps:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (bent TM6)
Method: single particle / : Feng Z, Accardi A

PDB-8tpt:
nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6/short TM6)
Method: single particle / : Feng Z, Accardi A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more