[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 36 items for (author: naismith & jh)

EMDB-17296:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-16364:
The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase Wzz form a complex in vivo and in vitro
Method: single particle / : Weckener M, Woodward LS, Clarke BR, Liu H, Ward PN, Le Bas A, Bhella D, Whitfield C, Naismith JH

EMDB-15636:
Human 80S ribosome structure from pFIB-lamellae
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16185:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 15 to 30 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16186:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 30 nm matched control (for 15 to 30 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16192:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:30 to 45 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16193:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 45 nm matched control (for 30 to 45 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16194:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:45 to 60 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16195:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 60 nm matched control (for 45 to 60 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16196:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 0 to 15 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16199:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 15 nm matched control (for 0 to 15 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-14531:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11 nanobody complex
Method: single particle / : Weckener M, Naismith JH, Vogirala VK

EMDB-14539:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H6 nanobody complex
Method: single particle / : Weckener M, Naismith JH

EMDB-14543:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-B5 nanobody complex
Method: single particle / : Weckener M, Naismith JH

EMDB-14544:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 1Up2Down conformation
Method: single particle / : Weckener M, Naismith JH

EMDB-14575:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-A10 nanobody complex
Method: single particle / : Weckener M, Naismith JH

EMDB-14576:
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 2Up1Down conformation
Method: single particle / : Weckener M, Naismith JH

EMDB-14153:
SARS-CoV-2 Spike, C3 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14152:
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14154:
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C1 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14155:
SARS-CoV-2 Spike, C1 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-12338:
Putative transmembrane protein Wzc K540M C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-12339:
Wzc K540M C8
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12340:
Octameric complex of WzC-K540M periplasmic local map
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12349:
Wzc-K540M-4YE C8
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12353:
Wzc-K540M-4YE C1
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12359:
Wzc-K540M MgADP C8
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12360:
Wzc-K540M MgADP C1
Method: single particle / : Naismith JH, Liu JW, Yang Y

EMDB-12777:
Nanobody C5 bound to Spike
Method: single particle / : Naismith JH, Weckener M

EMDB-11610:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with megabody MbNbF3c7HopQ
Method: single particle / : Uchanski T, Masiulis S

EMDB-4542:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with histamine and megabody Mb25
Method: single particle / : Uchanski T, Masiulis S, Fischer B, Kalichuk V, Wohlkoening A, Zoegg T, Remaut H, Vranken W, Aricescu AR, Pardon E, Steyaert J

EMDB-11173:
Association of three complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

EMDB-11218:
H11-H4 bound to Spike
Method: single particle / : Clare DK, Naismith JH, Weckener M, Vogirala VK

EMDB-11184:
Association of two complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

EMDB-11174:
SARS-CoV-2 Spike glycoprotein in complex with a neutralizing antibody EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

EMDB-11068:
Cryo-EM Structure of SARS-CoV-2 Spike : H11-D4 Nanobody Complex
Method: single particle / : Ruza RR, Duyvesteyn HME, Shah P, Carrique L, Ren J, Malinauskas T, Zhou D, Stuart DI, Naismith JH

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more