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ZZB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CBCGsing1.51Å1.34Å
CBO1sing1.44Å1.37Å
CGCD1doub1.38Å1.39ÅAromatic
CGCD2sing1.39Å1.39ÅAromatic
CD1CE1sing1.38Å1.39ÅAromatic
CD2CE2doub1.38Å1.40ÅAromatic
CD2Bsing1.55Å1.53Å
CE1CZdoub1.39Å1.40ÅAromatic
CE1Fsing1.35Å1.36Å
CE2CZsing1.39Å1.40ÅAromatic
CZNDsing1.40Å1.34Å
PO1Psing1.61Å1.62Å
PO2Psing1.61Å1.64Å
PO3Pdoub1.48Å1.49Å
PO5'sing1.61Å1.60Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
N9C1'sing1.46Å1.34Å
C8N7doub1.30Å1.33ÅAromatic
N7C5sing1.35Å1.33ÅAromatic
C5C6doub1.41Å1.39ÅAromatic
C5C4sing1.40Å1.39ÅAromatic
C6N6sing1.38Å1.34Å
C6N1sing1.33Å1.34ÅAromatic
N1C2doub1.32Å1.33ÅAromatic
C2N3sing1.32Å1.33ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
O5'C5'sing1.43Å1.44Å
C5'C4'sing1.53Å1.52Å
C4'O4'sing1.44Å1.48Å
C4'C3'sing1.54Å1.54Å
O4'C1'sing1.44Å1.37Å
C3'O3'sing1.44Å1.42Å
C3'C2'sing1.56Å1.52Å
O3'Bsing1.37Å1.45Å
C2'O2'sing1.44Å1.43Å
C2'C1'sing1.54Å1.52Å
O2'Bsing1.37Å1.44Å
O1Bsing1.37Å1.43Å
CFCKsing1.53Å1.54Å
CKNDsing1.46Å1.48Å
CBHBsing1.09Å1.10Å
CBHBAsing1.09Å1.10Å
CD1HD1sing1.08Å1.08Å
CE2HE2sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C2H2sing1.08Å1.08Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
CFHFsing1.09Å1.10Å
CFHFAsing1.09Å1.10Å
CFHFBsing1.09Å1.10Å
CKHKsing1.09Å1.10Å
CKHKAsing1.09Å1.10Å
NDHNDsing0.97Å1.00Å
O1PH1Psing0.97Å0.95Å
O2PH2Psing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CGCBO1112.5°106.6°
CBCGCD1131.2°133.5°
CBCGCD2109.4°106.3°
CGCBHB108.5°110.1°
CGCBHBA107.8°110.0°
CBO1B108.2°105.9°
O1CBHB108.5°110.1°
O1CBHBA107.8°110.0°
CD1CGCD2119.4°120.2°
CGCD1CE1120.4°120.0°
CGCD1HD1119.8°120.0°
CGCD2CE2121.1°120.2°
CGCD2B106.0°106.0°
CD1CE1CZ120.1°120.0°
CD1CE1F118.8°120.0°
CE1CD1HD1119.8°120.0°
CE2CD2B132.9°133.8°
CD2CE2CZ119.5°119.8°
CD2CE2HE2120.2°120.1°
CD2BO3'112.1°110.7°
CD2BO2'110.6°110.8°
CD2BO1103.8°106.6°
CZCE1F121.0°120.0°
CE1CZCE2119.6°119.9°
CE1CZND118.7°120.1°
CE2CZND121.8°120.0°
CZCE2HE2120.3°120.1°
CZNDCK123.9°120.0°
CZNDHND104.9°120.0°
O1PPO2P106.4°109.5°
O1PPO3P114.3°109.4°
O1PPO5'106.7°109.5°
PO1PH1P109.5°114.0°
O2PPO3P113.3°109.5°
O2PPO5'104.3°109.5°
PO2PH2P109.5°114.0°
O3PPO5'111.2°109.5°
PO5'C5'121.4°123.0°
C8N9C4108.7°107.4°
C8N9C1'125.3°126.3°
N9C8N7109.4°110.0°
N9C8H8125.3°125.0°
C4N9C1'125.9°126.3°
N9C4C5106.2°106.0°
N9C4N3134.8°134.9°
N9C1'O4'125.3°110.3°
N9C1'C2'124.2°110.4°
N9C1'H1'68.4°110.3°
C8N7C5107.6°109.5°
N7C8H8125.3°125.0°
N7C5C6132.8°134.7°
N7C5C4108.0°107.1°
C6C5C4119.2°118.2°
C5C6N6120.4°120.8°
C5C6N1118.8°118.5°
C5C4N3119.0°119.1°
N6C6N1120.9°120.8°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
C6N1C2120.8°121.2°
N1C2N3121.8°122.5°
N1C2H2119.1°118.8°
C2N3C4120.4°120.6°
N3C2H2119.1°118.8°
O5'C5'C4'107.5°109.5°
O5'C5'H5'110.1°109.5°
O5'C5'H5'A110.6°109.5°
C5'C4'O4'110.9°110.3°
C5'C4'C3'111.8°110.4°
C4'C5'H5'110.1°109.5°
C4'C5'H5'A110.6°109.4°
C5'C4'H4'105.8°110.3°
O4'C4'C3'105.7°105.0°
C4'O4'C1'103.4°105.2°
O4'C4'H4'111.8°110.3°
C4'C3'O3'112.0°108.6°
C4'C3'C2'103.8°103.8°
C3'C4'H4'110.9°110.5°
C4'C3'H3'110.0°113.1°
O4'C1'C2'106.7°104.9°
O4'C1'H1'110.6°110.3°
O3'C3'C2'104.3°103.1°
C3'O3'B107.0°105.0°
O3'C3'H3'109.6°113.2°
C3'C2'O2'102.0°103.1°
C3'C2'C1'96.7°103.8°
C2'C3'H3'117.0°114.1°
C3'C2'H2'123.7°113.4°
O3'BO2'106.0°107.4°
O3'BO1114.8°110.6°
O2'C2'C1'115.6°108.6°
C2'O2'B102.9°105.1°
O2'C2'H2'107.2°113.2°
C1'C2'H2'111.7°113.8°
C2'C1'H1'113.3°110.4°
O2'BO1109.7°110.7°
CFCKND107.6°109.5°
CKCFHF109.5°109.5°
CKCFHFA109.5°109.5°
CKCFHFB109.5°109.5°
CFCKHK110.1°109.5°
CFCKHKA110.5°109.5°
NDCKHK110.1°109.5°
NDCKHKA110.5°109.5°
CKNDHND104.9°120.0°
HBCBHBA111.9°110.0°
HN6N6HN6A109.5°120.0°
H5'C5'H5'A107.9°109.4°
HFCFHFA109.5°109.4°
HFCFHFB109.5°109.4°
HFACFHFB109.5°109.5°
HKCKHKA108.1°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CGCBO1HB120.0°119.3°
CGCBO1HBA118.7°119.3°
CBCGCD1CD2179.3°179.9°
CBCGCD1CE1179.3°179.9°
CBCGCD2CE2179.8°179.8°
CBCGCD2B1.4°0.3°
CGCBO1B1.9°29.0°
CGCBHBHBA118.8°121.4°
CBCGCD1HD10.7°0.1°
O1CBCGCD1179.1°162.7°
O1CBCGCD20.3°17.4°
CBO1BCD22.6°28.4°
CBO1BO3'125.2°92.0°
CBO1BO2'115.7°149.0°
O1CBHBHBA118.7°121.4°
CGCD1CE1HD1180.0°180.0°
CD1CGCD2CE20.4°0.1°
CD1CGCD2B179.2°179.7°
CGCD1CE1CZ0.2°0.1°
CGCD1CE1F179.6°180.0°
CD1CGCBHB59.0°78.0°
CD1CGCBHBA62.3°43.4°
CD2CGCD1CE10.0°0.0°
CGCD2CE2B178.5°179.8°
CGCD2CE2CZ0.5°0.1°
CGCD2BO3'126.8°102.7°
CGCD2BO2'115.2°138.3°
CGCD2BO12.4°17.7°
CD2CGCBHB120.3°101.9°
CD2CGCBHBA118.4°136.7°
CD2CGCD1HD1179.9°179.9°
CGCD2CE2HE2179.5°179.9°
CD1CE1CZF179.4°179.9°
CD1CE1CZCE20.0°0.1°
CD1CE1CZND179.5°180.0°
CD2CE2CZCE10.3°0.0°
CD2CE2CZHE2180.0°179.9°
CD2CE2CZND179.8°179.9°
CE2CD2BO3'54.6°77.5°
CE2CD2BO2'63.5°41.5°
CE2CD2BO1179.0°162.1°
BCD2CE2CZ179.0°179.6°
CD2BO3'C3'135.6°161.3°
CD2BO3'O2'120.8°121.1°
CD2BO3'O1118.1°118.0°
CD2BO2'C2'158.0°161.3°
CD2BO2'O1113.9°118.1°
BCD2CE2HE21.0°0.3°
CE1CZCE2ND179.5°179.9°
CE1CZNDCK178.3°180.0°
CZCE1CD1HD1179.9°180.0°
CE1CZCE2HE2179.7°180.0°
CE1CZNDHND58.3°0.1°
FCE1CZCE2179.5°180.0°
FCE1CZND0.1°0.1°
FCE1CD1HD10.4°0.0°
CE2CZNDCK1.2°0.1°
CE2CZNDHND121.2°180.0°
CZNDCKCF166.9°180.0°
CZNDCKHND120.0°179.9°
NDCZCE2HE20.2°0.0°
CZNDCKHK73.1°60.0°
CZNDCKHKA46.2°59.9°
O1PPO2PO3P126.4°120.0°
O1PPO2PO5'112.6°120.0°
O1PPO3PO5'120.9°120.0°
O1PPO5'C5'172.9°65.0°
O1PPO2PH2P104.7°60.0°
O2PPO3PO5'117.1°120.0°
O2PPO5'C5'60.6°175.0°
O2PPO1PH1P46.5°60.0°
O3PPO5'C5'61.8°54.9°
O3PPO1PH1P172.3°180.0°
O3PPO2PH2P128.9°60.0°
PO5'C5'C4'148.5°180.0°
PO5'C5'H5'91.5°59.9°
PO5'C5'H5'A27.7°60.0°
O5'PO1PH1P64.3°60.0°
O5'PO2PH2P7.8°180.0°
C8N9C4C1'176.4°179.7°
N9C8N7H8180.0°180.0°
N9C8N7C50.8°0.0°
C8N9C4C51.4°0.0°
C8N9C4N3179.6°180.0°
C8N9C1'O4'114.2°23.6°
C8N9C1'C2'41.1°91.9°
C8N9C1'H1'145.3°145.8°
C4N9C8N71.4°0.0°
N9C4C5N70.9°0.0°
N9C4C5C6179.1°180.0°
N9C4C5N3179.2°180.0°
N9C4N3C2178.7°180.0°
C4N9C1'O4'61.7°156.8°
C4N9C1'C2'143.1°87.7°
C4N9C8H8178.6°180.0°
C4N9C1'H1'38.9°34.6°
C1'N9C8N7177.8°179.7°
C1'N9C4C5177.8°179.7°
C1'N9C4N33.2°0.3°
N9C1'O4'C4'115.0°159.7°
N9C1'O4'C2'158.8°118.9°
N9C1'O4'H1'77.5°122.1°
N9C1'C2'C3'109.7°143.1°
N9C1'C2'O2'143.6°107.8°
N9C1'C2'H1'78.9°122.2°
C1'N9C8H82.2°0.3°
N9C1'C2'H2'20.7°19.3°
C8N7C5C6180.0°180.0°
C8N7C5C40.1°0.0°
N7C5C6C4180.0°180.0°
N7C5C6N60.0°0.0°
N7C5C6N1179.8°180.0°
N7C5C4N3179.9°180.0°
C5N7C8H8179.2°180.0°
C5C6N6N1179.8°180.0°
C5C6N1C20.4°0.1°
C6C5C4N30.0°0.0°
C5C6N6HN6156.9°0.0°
C5C6N6HN6A36.9°180.0°
C4C5C6N6180.0°180.0°
C4C5C6N10.2°0.0°
C5C4N3C20.2°0.0°
N6C6N1C2179.8°180.0°
C6N6HN6HN6A120.0°180.0°
C6N1C2N30.3°0.1°
N1C6N6HN623.3°180.0°
N1C6N6HN6A143.3°0.0°
C6N1C2H2179.7°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.0°0.0°
C4N3C2H2180.0°179.9°
O5'C5'C4'H5'120.0°120.1°
O5'C5'C4'H5'A120.8°120.0°
O5'C5'C4'O4'38.1°66.4°
O5'C5'C4'C3'155.9°178.0°
O5'C5'H5'H5'A120.8°120.0°
O5'C5'C4'H4'83.3°55.7°
C5'C4'O4'C3'121.4°118.9°
C5'C4'O4'H4'117.8°122.1°
C5'C4'C3'H4'117.8°122.2°
C5'C4'O4'C1'102.1°159.7°
C5'C4'C3'O3'116.1°107.8°
C5'C4'C3'C2'132.0°142.9°
C4'C5'H5'H5'A120.8°119.9°
C5'C4'C3'H3'6.0°18.8°
O4'C4'C3'H4'121.4°118.9°
O4'C4'C3'O3'123.2°133.3°
O4'C4'C3'C2'11.2°24.1°
C4'O4'C1'C2'43.7°40.9°
O4'C4'C5'H5'81.9°53.6°
O4'C4'C5'H5'A158.9°173.5°
O4'C4'C3'H3'114.7°100.1°
C4'O4'C1'H1'167.5°78.1°
C3'C4'O4'C1'19.2°40.8°
C4'C3'O3'C2'111.6°109.7°
C4'C3'O3'H3'122.4°126.5°
C4'C3'C2'H3'121.4°123.6°
C4'C3'O3'B100.6°132.9°
C4'C3'C2'O2'84.3°113.3°
C4'C3'C2'C1'33.7°0.1°
C3'C4'C5'H5'35.9°61.9°
C3'C4'C5'H5'A83.3°57.9°
C4'C3'C2'H2'155.4°123.9°
O4'C1'C2'C3'49.4°24.2°
O4'C1'C2'O2'57.3°133.4°
O4'C1'C2'H1'122.0°118.9°
C1'O4'C4'H4'140.1°78.2°
O4'C1'C2'H2'179.8°99.6°
O3'C3'C2'H3'121.2°123.2°
O3'C3'C2'O2'33.1°0.0°
O3'C3'C2'C1'151.1°113.1°
C3'O3'BO2'14.8°40.3°
C3'O3'BO1106.3°80.7°
O3'C3'C4'H4'1.7°14.4°
O3'C3'C2'H2'87.2°122.9°
C2'C3'O3'B11.0°23.2°
C3'C2'O2'C1'103.5°109.7°
C3'C2'O2'H2'131.2°122.9°
C3'C2'C1'H2'130.3°123.8°
C3'C2'O2'B41.9°23.1°
C2'C3'C4'H4'110.2°94.9°
C3'C2'C1'H1'171.5°94.7°
O3'BO2'C2'36.3°40.3°
O3'BO2'O1124.4°120.9°
BO3'C3'H3'137.0°100.6°
O2'C2'C1'H2'122.9°127.1°
C2'O2'BO188.1°80.6°
O2'C2'C3'H3'154.3°123.2°
O2'C2'C1'H1'64.7°14.5°
C1'C2'O2'B145.4°132.8°
C1'C2'C3'H3'87.7°123.7°
BO2'C2'H2'89.3°99.8°
BO1CBHB122.0°90.4°
BO1CBHBA116.8°148.2°
CFCKNDHK120.0°120.0°
CFCKNDHKA120.7°120.1°
CKCFHFHFA120.0°120.0°
CKCFHFHFB120.0°120.0°
CKCFHFAHFB120.0°120.0°
CFCKHKHKA120.7°120.0°
CFCKNDHND73.1°0.0°
NDCKCFHF21.6°180.0°
NDCKCFHFA98.4°60.0°
NDCKCFHFB141.6°60.1°
NDCKHKHKA120.8°120.0°
H5'C5'C4'H4'156.7°175.7°
H5'AC5'C4'H4'37.5°64.4°
H4'C4'C3'H3'123.8°141.0°
H3'C3'C2'H2'34.0°0.3°
H2'C2'C1'H1'58.2°141.5°
HFCFHFAHFB120.0°119.9°
HFCFCKHK98.4°60.0°
HFCFCKHKA142.3°60.0°
HFACFCKHK141.6°60.0°
HFACFCKHKA22.3°180.0°
HFBCFCKHK21.6°180.0°
HFBCFCKHKA97.7°60.0°
HKCKNDHND46.9°120.0°
HKACKNDHND166.2°120.0°

222624

PDB entries from 2024-07-17

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