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ZXR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PBO3Bsing1.59Å1.66Å
PBO5'sing1.58Å1.74Å
PBO2Bdoub1.48Å1.69Å
PBO1Bsing1.52Å1.68Å
O3BPAsing1.59Å1.63Å
O3APAsing1.58Å1.73Å
O3AC10sing1.44Å1.37Å
PAO1Adoub1.48Å1.73Å
PAO2Asing1.52Å1.67Å
O5'C5'sing1.45Å1.39Å
C5'C4'sing1.51Å1.52Å
C4'O4'sing1.45Å1.44Å
C4'C3'sing1.54Å1.53Å
O4'C1'sing1.42Å1.44Å
C3'O3'sing1.42Å1.40Å
C3'C2'sing1.54Å1.52Å
C2'C1'sing1.53Å1.51Å
C2'O2'sing1.41Å1.41Å
C1'N9sing1.47Å1.47Å
N9C4sing1.38Å1.34ÅAromatic
N9C8sing1.37Å1.37ÅAromatic
C8N7doub1.31Å1.35ÅAromatic
N7C5sing1.39Å1.36ÅAromatic
C5C6sing1.45Å1.39Å
C5C4doub1.39Å1.35ÅAromatic
C6O6doub1.22Å1.23Å
C6N1sing1.36Å1.37Å
N1C2doub1.33Å1.37Å
C2N2sing1.34Å1.41Å
C2N3sing1.36Å1.38Å
N3C4sing1.38Å1.36Å
C10C11sing1.51Å1.55Å
C11C12sing1.53Å1.51Å
C11O11sing1.44Å1.41Å
O11C23sing1.44Å1.40Å
C12C13sing1.54Å1.36Å
C12S12sing1.79Å1.80Å
S12MOsing2.40Å2.31Å
C13C14sing1.55Å1.50Å
C13S13sing1.79Å1.78Å
S13MOsing2.41Å2.60Å
C14C23sing1.57Å1.54Å
C14N15sing1.47Å1.47Å
N15C16sing1.40Å1.44Å
C16C17sing1.44Å1.39Å
C16C21doub1.41Å1.40Å
C17N18sing1.39Å1.36Å
C17O17doub1.23Å1.23Å
N18C19sing1.37Å1.34Å
C19N19sing1.33Å1.41Å
C19N20doub1.34Å1.35Å
N20C21sing1.36Å1.35Å
C21N22sing1.36Å1.43Å
N22C23sing1.45Å1.45Å
MOOT1doub1.70Å1.76Å
MOOT2doub1.70Å1.84Å
O1BH1sing0.89Å0.95Å
O2AH2sing0.89Å0.95Å
C5'H3sing0.99Å1.10Å
C5'H4sing0.99Å1.10Å
C4'H5sing0.99Å1.10Å
C3'H6sing0.99Å1.10Å
O3'H7sing0.84Å0.95Å
C2'H8sing0.99Å1.10Å
O2'H9sing0.84Å0.95Å
C1'H10sing1.02Å1.10Å
C8H11sing0.94Å1.08Å
N2H12sing0.88Å1.00Å
N2H13sing0.88Å1.00Å
N3H14sing0.89Å1.00Å
C10H15sing0.98Å1.10Å
C10H16sing0.98Å1.10Å
C11H17sing0.99Å1.10Å
C12H18sing0.98Å1.10Å
C13H19sing0.98Å1.10Å
C14H20sing0.99Å1.10Å
N15H21sing0.87Å1.00Å
N19H24sing0.88Å1.00Å
N19H25sing0.88Å1.00Å
N22H26sing0.88Å1.00Å
C23H27sing0.98Å1.10Å
H22N18sing0.88Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3BPBO5'101.5°104.8°
O3BPBO2B109.0°109.4°
O3BPBO1B104.2°104.9°
PBO3BPA133.6°132.1°
O5'PBO2B112.4°115.5°
O5'PBO1B106.3°107.5°
PBO5'C5'112.4°122.6°
O2BPBO1B121.4°113.8°
PBO1BH1109.5°113.1°
O3BPAO3A102.9°105.0°
O3BPAO1A108.6°109.4°
O3BPAO2A110.3°105.0°
PAO3AC10113.0°121.5°
O3APAO1A105.1°115.0°
O3APAO2A112.7°107.6°
O3AC10C11102.8°109.1°
O3AC10H15111.1°109.8°
O3AC10H16111.1°110.1°
O1APAO2A116.2°114.0°
PAO2AH2109.5°113.2°
O5'C5'C4'106.1°110.3°
O5'C5'H3110.3°109.7°
O5'C5'H4110.3°109.7°
C5'C4'O4'108.1°109.1°
C5'C4'C3'111.5°116.6°
C4'C5'H3110.3°109.3°
C4'C5'H4110.3°109.7°
C5'C4'H5109.1°107.6°
O4'C4'C3'109.0°106.2°
C4'O4'C1'103.8°110.3°
O4'C4'H5110.2°108.6°
C4'C3'O3'106.6°109.4°
C4'C3'C2'101.8°104.1°
C3'C4'H5109.0°108.5°
C4'C3'H6111.8°111.1°
O4'C1'C2'103.1°105.3°
O4'C1'N9102.7°109.6°
O4'C1'H10113.1°110.1°
O3'C3'C2'110.4°113.3°
O3'C3'H6113.7°109.2°
C3'O3'H7109.5°110.7°
C3'C2'C1'101.0°102.1°
C3'C2'O2'114.8°112.7°
C2'C3'H6111.8°109.6°
C3'C2'H8109.4°110.2°
C1'C2'O2'110.6°111.3°
C2'C1'N9112.8°113.3°
C1'C2'H8109.5°109.8°
C2'C1'H10111.9°109.4°
O2'C2'H8111.0°110.5°
C2'O2'H9109.5°110.7°
C1'N9C4126.6°125.9°
C1'N9C8127.4°128.3°
N9C1'H10112.5°109.1°
C4N9C8105.5°105.8°
N9C4C5109.4°106.0°
N9C4N3126.6°134.7°
N9C8N7110.8°113.8°
N9C8H11124.6°123.1°
C8N7C5105.2°104.5°
N7C8H11124.6°123.1°
N7C5C6130.9°132.6°
N7C5C4109.0°110.0°
C6C5C4120.0°117.4°
C5C6O6126.9°122.7°
C5C6N1117.1°120.2°
C5C4N3124.0°119.3°
O6C6N1116.0°117.1°
C6N1C2121.7°120.2°
N1C2N2116.1°119.7°
N1C2N3121.5°122.2°
N2C2N3122.4°118.1°
C2N2H12120.0°119.7°
C2N2H13120.0°121.1°
C2N3C4115.7°120.7°
C2N3H14122.2°118.7°
C4N3H14122.1°120.5°
C10C11C12109.4°116.3°
C10C11O11110.9°103.9°
C11C10H15111.1°110.1°
C11C10H16111.1°109.6°
C10C11H17106.9°108.6°
C12C11O11113.5°110.5°
C11C12C13119.9°111.4°
C11C12S12117.1°109.8°
C12C11H17107.3°108.5°
C11C12H1894.6°108.3°
C11O11C23105.4°121.3°
O11C11H17108.6°108.6°
O11C23C14109.1°112.0°
O11C23N22106.1°108.3°
O11C23H27111.2°108.8°
C13C12S12121.1°105.6°
C12C13C14118.2°113.4°
C12C13S13123.3°106.2°
C13C12H1895.1°108.1°
C12C13H1991.8°107.9°
C12S12MO106.8°104.2°
S12C12H1893.9°113.6°
S12MOS1384.2°82.4°
S12MOOT191.3°90.0°
S12MOOT286.0°93.7°
C14C13S13118.2°109.2°
C13C14C23112.1°109.8°
C13C14N15109.0°115.8°
C14C13H1991.7°107.4°
C13C14H20106.6°105.8°
C13S13MO97.5°104.2°
S13C13H1991.4°112.8°
S13MOOT1103.6°90.0°
S13MOOT2151.4°176.2°
C23C14N15115.4°110.5°
C14C23N22110.5°112.0°
C23C14H20106.2°105.6°
C14C23H27109.3°107.8°
C14N15C16113.4°123.1°
N15C14H20107.0°108.8°
C14N15H21108.5°118.2°
N15C16C17125.1°121.8°
N15C16C21116.4°118.9°
C16N15H21108.5°118.7°
C17C16C21118.4°119.3°
C16C17N18115.9°114.8°
C16C17O17127.3°125.4°
C16C21N20122.4°122.4°
C16C21N22123.6°120.8°
N18C17O17116.7°119.8°
C17N18C19125.1°122.4°
C17N18H22117.4°118.5°
N18C19N19122.0°117.9°
N18C19N20119.5°123.0°
C19N18H22117.5°119.1°
N19C19N20118.4°119.2°
C19N19H24120.0°120.1°
C19N19H25120.0°120.6°
C19N20C21118.6°118.0°
N20C21N22114.0°116.8°
C21N22C23120.6°122.7°
C21N22H26106.6°118.2°
C23N22H26106.6°119.1°
N22C23H27110.4°107.8°
OT1MOOT2103.5°90.0°
H3C5'H4109.5°108.2°
H12N2H13120.0°119.2°
H15C10H16109.5°108.0°
H24N19H25120.0°119.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3BPBO5'O2B116.4°120.4°
O3BPBO5'O1B108.7°111.3°
O3BPBO2BO1B121.0°117.0°
PBO3BPAO3A169.8°164.1°
PBO3BPAO1A79.1°40.1°
PBO3BPAO2A49.3°82.6°
O3BPBO5'C5'126.9°76.1°
O3BPBO1BH1123.3°179.9°
O5'PBO2BO1B127.3°125.1°
O5'PBO3BPA50.8°172.9°
PBO5'C5'C4'143.5°155.1°
O5'PBO1BH1130.0°68.9°
PBO5'C5'H397.0°34.7°
PBO5'C5'H424.1°84.0°
O2BPBO3BPA68.0°62.7°
O2BPBO5'C5'10.6°44.3°
O2BPBO1BH10.0°60.3°
O1BPBO3BPA161.0°59.8°
O1BPBO5'C5'124.4°172.7°
O3BPAO3AO1A113.7°120.3°
O3BPAO3AO2A118.8°111.5°
O3BPAO3AC1066.4°66.2°
O3BPAO1AO2A125.0°117.2°
O3BPAO2AH2124.2°179.9°
O3APAO1AO2A125.4°124.9°
PAO3AC10C11157.0°174.8°
O3APAO2AH2121.4°68.6°
PAO3AC10H1584.0°64.5°
PAO3AC10H1638.1°54.4°
C10O3APAO1A179.9°54.2°
C10O3APAO2A52.4°177.7°
O3AC10C11H15118.9°120.6°
O3AC10C11H16119.0°120.7°
O3AC10C11C12144.0°168.3°
O3AC10C11O1190.1°70.0°
O3AC10H15H16123.1°120.2°
O3AC10C11H1728.1°45.6°
O1APAO2AH20.0°60.2°
O5'C5'C4'H3119.5°120.7°
O5'C5'C4'H4119.5°120.9°
O5'C5'C4'O4'170.2°52.6°
O5'C5'C4'C3'70.1°67.7°
O5'C5'H3H4121.6°119.6°
O5'C5'C4'H550.3°170.2°
C5'C4'O4'C3'121.3°126.4°
C5'C4'O4'H5119.1°117.0°
C5'C4'C3'H5120.5°121.6°
C5'C4'O4'C1'143.7°135.2°
C5'C4'C3'O3'131.3°130.4°
C5'C4'C3'C2'113.0°108.2°
C4'C5'H3H4121.6°119.3°
C5'C4'C3'H66.4°9.7°
O4'C4'C3'H5120.3°116.6°
O4'C4'C3'O3'109.5°107.8°
O4'C4'C3'C2'6.2°13.6°
C4'O4'C1'C2'42.3°27.8°
C4'O4'C1'N9159.7°149.9°
O4'C4'C5'H350.7°68.1°
O4'C4'C5'H470.3°173.5°
O4'C4'C3'H6125.6°131.5°
C4'O4'C1'H1078.8°90.1°
C3'C4'O4'C1'22.3°8.7°
C4'C3'O3'C2'109.8°115.7°
C4'C3'O3'H6123.6°121.8°
C4'C3'C2'H6119.4°119.0°
C4'C3'C2'C1'30.5°28.8°
C4'C3'C2'O2'149.5°148.2°
C3'C4'C5'H3170.5°171.6°
C3'C4'C5'H449.4°53.2°
C4'C3'O3'H7180.0°171.2°
C4'C3'C2'H884.9°87.8°
O4'C1'C2'C3'45.8°34.8°
O4'C1'C2'N9110.1°119.8°
O4'C1'C2'H10121.9°118.3°
O4'C1'C2'O2'167.8°155.2°
O4'C1'N9H10121.9°120.6°
O4'C1'N9C495.8°157.7°
O4'C1'N9C875.8°22.6°
C1'O4'C4'H597.2°107.8°
O4'C1'C2'H869.5°82.2°
O3'C3'C2'H6127.7°122.2°
O3'C3'C2'C1'82.4°90.0°
O3'C3'C2'O2'36.6°29.4°
O3'C3'C4'H510.8°8.7°
O3'C3'C2'H8162.2°153.4°
C3'C2'C1'O2'122.0°120.4°
C3'C2'C1'H8115.3°116.9°
C3'C2'O2'H8124.7°123.8°
C3'C2'C1'N9155.9°154.5°
C2'C3'C4'H5126.5°130.2°
C2'C3'O3'H770.2°73.1°
C3'C2'O2'H9180.0°169.3°
C3'C2'C1'H1076.1°83.5°
C1'C2'O2'H8121.8°122.2°
C2'C1'N9H10127.7°122.1°
C2'C1'N9C4153.9°85.0°
C2'C1'N9C834.5°94.7°
C1'C2'C3'H6149.9°147.8°
C1'C2'O2'H966.5°76.8°
O2'C2'C1'N982.1°85.0°
O2'C2'C3'H691.1°92.8°
O2'C2'C1'H1046.0°36.9°
C1'N9C4C8173.1°179.7°
C1'N9C8N7174.6°180.0°
C1'N9C4C5176.8°179.9°
C1'N9C4N34.8°0.1°
N9C1'C2'H840.6°37.6°
C1'N9C8H115.4°0.4°
C4N9C8N71.6°0.2°
N9C4C5N74.5°0.0°
N9C4C5C6179.0°180.0°
N9C4C5N3178.5°180.0°
N9C4N3C2177.8°180.0°
C4N9C1'H1026.1°37.1°
C4N9C8H11178.4°179.9°
N9C4N3H142.3°0.0°
N9C8N7H11180.0°179.7°
N9C8N7C51.1°0.2°
C8N9C4C53.7°0.2°
C8N9C4N3177.9°179.8°
C8N9C1'H10162.3°143.2°
C8N7C5C6179.3°179.8°
C8N7C5C43.4°0.1°
N7C5C6C4175.5°180.0°
N7C5C6O63.2°0.0°
N7C5C6N1176.1°179.9°
N7C5C4N3177.0°180.0°
C5N7C8H11178.9°179.9°
C5C6O6N1179.2°180.0°
C5C6N1C20.5°0.0°
C6C5C4N30.6°0.0°
C4C5C6O6178.7°180.0°
C4C5C6N10.5°0.0°
C5C4N3C20.4°0.0°
C5C4N3H14179.6°180.0°
O6C6N1C2179.8°180.0°
C6N1C2N2179.1°179.9°
C6N1C2N31.5°0.0°
N1C2N2N3177.5°180.0°
N1C2N3C41.5°0.0°
N1C2N2H120.0°0.1°
N1C2N2H13180.0°180.0°
N1C2N3H14178.5°180.0°
N2C2N3C4178.9°180.0°
C2N2H12H13180.0°179.9°
N2C2N3H141.1°0.1°
C2N3C4H14180.0°180.0°
N3C2N2H12177.5°179.9°
N3C2N2H132.5°0.0°
C10C11C12O11124.4°118.2°
C10C11C12H17115.6°122.8°
C10C11O11H17117.2°115.6°
C10C11O11C23176.2°176.3°
C10C11C12C13150.8°167.8°
C10C11C12S1244.6°75.6°
C11C10H15H16123.1°119.7°
C10C11C12H1852.2°49.1°
C12C11O11H17119.2°118.9°
C12C11O11C2360.2°50.8°
C11C12C13S12164.0°119.2°
C11C12C13H1898.4°118.9°
C11C12S12H1897.2°121.5°
C11C12S12MO158.9°171.7°
C11C12C13C144.0°53.4°
C11C12C13S13178.3°173.3°
C12C11C10H1597.1°47.7°
C12C11C10H1625.0°71.0°
C11C12C13H1988.8°65.4°
O11C11C12C1326.4°49.6°
O11C11C12S12169.0°166.2°
C11O11C23C1472.4°49.3°
C11O11C23N22168.5°173.3°
O11C11C10H1528.8°169.4°
O11C11C10H16150.9°50.7°
O11C11C12H1872.2°69.1°
C11O11C23H2748.3°69.8°
O11C23C14C1350.4°45.8°
O11C23C14N22116.4°121.9°
O11C23C14H27121.9°119.6°
O11C23C14N1575.2°83.1°
O11C23N22C21108.9°91.4°
O11C23N22H27120.7°117.5°
C23O11C11H1759.1°68.2°
O11C23C14H20166.4°159.4°
O11C23N22H2612.6°89.1°
C13C12S12H1898.4°118.3°
C13C12S12MO5.4°51.5°
C12C13C14S13174.6°118.2°
C12C13C14H1992.9°119.1°
C12C13S13H1993.1°118.0°
C12C13S13MO27.4°49.7°
C12C13C14C2315.4°50.5°
C12C13C14N15113.6°75.4°
C13C12C11H1793.6°69.4°
C12C13C14H20131.2°164.0°
S12C12C13C14168.0°172.6°
S12C12C13S1317.7°67.5°
C12S12MOS1315.9°16.7°
C12S12MOOT187.6°73.3°
C12S12MOOT2169.0°163.3°
S12C12C11H1771.0°47.2°
S12C12C13H1975.1°53.8°
S12MOS13C1321.3°14.4°
S12MOS13OT189.9°90.0°
S12MOS13OT270.7°0.4°
S12MOOT1OT286.2°93.7°
MOS12C12H18103.8°66.8°
C14C13S13H1992.6°119.3°
C14C13S13MO158.3°172.4°
C13C14C23N15125.6°128.9°
C13C14C23H20116.1°113.7°
C13C14N15H20115.0°118.9°
C13C14N15C16179.6°155.2°
C13C14C23N22166.7°167.7°
C14C13C12H1894.3°65.5°
C13C14N15H2159.8°25.6°
C13C14C23H2771.5°73.8°
S13C13C14C23170.0°168.7°
S13C13C14N1561.1°42.8°
C13S13MOOT168.6°104.3°
C13S13MOOT292.0°14.8°
S13C13C12H1880.0°54.5°
S13C13C14H2054.2°77.7°
S13MOOT1OT2170.6°176.2°
MOS13C13H1965.6°68.3°
C23C14N15H20117.9°115.5°
C23C14N15C1653.3°29.6°
C14C23N22C219.3°32.6°
C14C23N22H27121.1°118.5°
C23C14C13H1977.5°68.6°
C23C14N15H2167.3°151.2°
C14C23N22H26130.8°146.9°
C14N15C16H21120.6°179.2°
C14N15C16C17145.4°170.4°
C14N15C16C2130.9°9.2°
N15C14C23N2241.2°38.8°
N15C14C13H19153.5°165.5°
N15C14C23H27162.9°157.3°
N15C16C17C21176.2°179.6°
N15C16C17N18178.5°179.6°
N15C16C17O170.1°0.7°
N15C16C21N20179.2°179.3°
N15C16C21N220.9°2.1°
C16N15C14H2064.6°85.9°
C16C17N18O17178.7°178.9°
C16C17N18C190.5°0.7°
C17C16C21N202.6°1.1°
C17C16C21N22177.5°178.3°
C17C16N15H2194.0°8.8°
C16C17N18H22179.5°179.7°
C21C16C17N182.3°0.0°
C21C16C17O17176.2°178.9°
C16C21N20C190.9°1.4°
C16C21N20N22179.9°177.4°
C16C21N22C2311.9°11.6°
C21C16N15H2189.7°171.6°
C16C21N22H26109.7°168.0°
C17N18C19H22180.0°179.6°
C17N18C19N19177.4°179.7°
C17N18C19N201.3°0.4°
O17C17N18C19178.2°179.6°
O17C17N18H221.8°0.8°
N18C19N19N20178.7°180.0°
N18C19N20C211.1°0.7°
N18C19N19H24178.7°180.0°
N18C19N19H251.3°0.2°
N19C19N20C21177.7°179.2°
C19N19H24H25179.9°179.9°
N19C19N18H222.6°0.1°
C19N20C21N22179.2°178.8°
N20C19N19H240.0°0.0°
N20C19N19H25180.0°179.9°
N20C19N18H22178.7°180.0°
N20C21N22C23168.2°165.8°
N20C21N22H2670.2°14.6°
C21N22C23H26121.5°179.6°
C21N22C23H27130.4°151.1°
N22C23C14H2077.2°78.6°
H3C5'C4'H569.1°49.5°
H4C5'C4'H5169.8°68.9°
H5C4'C3'H6114.1°111.9°
H6C3'O3'H756.4°49.3°
H6C3'C2'H834.5°31.2°
H8C2'O2'H955.3°45.5°
H8C2'C1'H10168.6°159.6°
H15C10C11H17147.0°75.0°
H16C10C11H1790.9°166.3°
H17C11C12H18167.8°171.8°
H18C12C13H19172.8°175.7°
H19C13C14H2038.3°44.9°
H20C14N15H21174.8°93.3°
H20C14C23H2744.6°39.8°
H26N22C23H27108.0°28.5°

259015

PDB entries from 2026-09-02

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