ZW9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | doub | 1.34Å | 1.43Å | |
| N1 | C10 | sing | 1.36Å | 1.36Å | |
| C2 | N2 | sing | 1.33Å | 1.32Å | |
| C2 | N3 | sing | 1.37Å | 1.37Å | |
| N3 | C4 | sing | 1.39Å | 1.41Å | |
| C4 | C9 | sing | 1.44Å | 1.50Å | |
| C4 | O4 | doub | 1.23Å | 1.26Å | |
| N5 | C9 | sing | 1.39Å | 1.53Å | |
| N5 | C6 | sing | 1.46Å | 1.57Å | |
| C6 | C7 | sing | 1.56Å | 1.70Å | |
| C6 | C1' | sing | 1.53Å | 1.46Å | |
| C7 | O3' | sing | 1.44Å | 1.48Å | |
| C7 | N8 | sing | 1.46Å | 1.47Å | |
| N8 | C10 | sing | 1.36Å | 1.41Å | |
| C9 | C10 | doub | 1.41Å | 1.66Å | |
| C1' | C2' | doub | 1.35Å | 1.51Å | |
| C1' | S1' | sing | 1.68Å | 1.59Å | |
| S1' | MO | sing | 2.28Å | 2.57Å | |
| C2' | C3' | sing | 1.52Å | 1.61Å | |
| C2' | S2' | sing | 1.68Å | 1.71Å | |
| S2' | MO | sing | 2.28Å | 2.19Å | |
| C3' | O3' | sing | 1.44Å | 1.48Å | |
| C3' | C4' | sing | 1.53Å | 1.42Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| O4' | P | sing | 1.57Å | 1.37Å | |
| P | O3P | doub | 1.49Å | 1.30Å | |
| P | O2P | sing | 1.54Å | 1.45Å | |
| P | O1P | sing | 1.54Å | 1.53Å | |
| MO | O1 | sing | 1.66Å | 2.51Å | |
| MO | S | doub | 2.39Å | 1.96Å | |
| MO | O2 | sing | 1.66Å | 1.95Å | |
| N2 | H1 | sing | 0.88Å | 1.00Å | |
| N2 | H2 | sing | 0.88Å | 1.00Å | |
| N5 | H3 | sing | 0.87Å | 1.00Å | |
| C6 | H5 | sing | 0.99Å | 1.10Å | |
| C7 | H6 | sing | 0.99Å | 1.10Å | |
| N8 | H7 | sing | 0.88Å | 1.00Å | |
| C3' | H9 | sing | 0.99Å | 1.10Å | |
| C4' | H10 | sing | 0.98Å | 1.10Å | |
| C4' | H11 | sing | 0.98Å | 1.10Å | |
| O1P | H12 | sing | 0.89Å | 0.95Å | |
| O2P | H13 | sing | 0.89Å | 0.95Å | |
| O1 | H15 | sing | 0.87Å | 0.95Å | |
| O2 | H16 | sing | 0.87Å | 0.95Å | |
| N3 | H4 | sing | 0.88Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C10 | 127.9° | 118.0° |
| N1 | C2 | N2 | 117.7° | 119.1° |
| N1 | C2 | N3 | 118.4° | 123.0° |
| N1 | C10 | N8 | 126.1° | 116.7° |
| N1 | C10 | C9 | 114.7° | 122.3° |
| N2 | C2 | N3 | 123.9° | 117.9° |
| C2 | N2 | H1 | 120.0° | 120.1° |
| C2 | N2 | H2 | 120.0° | 120.5° |
| C2 | N3 | C4 | 124.1° | 122.5° |
| C2 | N3 | H4 | 117.9° | 119.1° |
| N3 | C4 | C9 | 121.0° | 114.9° |
| N3 | C4 | O4 | 123.9° | 119.7° |
| C4 | N3 | H4 | 117.9° | 118.4° |
| C9 | C4 | O4 | 115.1° | 125.3° |
| C4 | C9 | N5 | 129.2° | 121.3° |
| C4 | C9 | C10 | 113.8° | 119.2° |
| C9 | N5 | C6 | 116.4° | 122.6° |
| N5 | C9 | C10 | 117.0° | 119.4° |
| C9 | N5 | H3 | 107.7° | 117.8° |
| N5 | C6 | C7 | 108.9° | 112.3° |
| N5 | C6 | C1' | 112.2° | 110.7° |
| C6 | N5 | H3 | 107.7° | 119.6° |
| N5 | C6 | H5 | 107.3° | 107.7° |
| C7 | C6 | C1' | 113.3° | 112.2° |
| C6 | C7 | O3' | 106.0° | 111.2° |
| C6 | C7 | N8 | 114.5° | 112.7° |
| C7 | C6 | H5 | 106.0° | 106.3° |
| C6 | C7 | H6 | 108.1° | 108.8° |
| C6 | C1' | C2' | 117.5° | 122.7° |
| C6 | C1' | S1' | 114.5° | 116.5° |
| C1' | C6 | H5 | 108.7° | 107.2° |
| O3' | C7 | N8 | 106.1° | 107.6° |
| C7 | O3' | C3' | 117.8° | 121.3° |
| O3' | C7 | H6 | 111.0° | 108.7° |
| C7 | N8 | C10 | 124.1° | 122.7° |
| N8 | C7 | H6 | 111.0° | 107.7° |
| C7 | N8 | H7 | 105.7° | 119.1° |
| N8 | C10 | C9 | 119.2° | 121.0° |
| C10 | N8 | H7 | 105.7° | 118.3° |
| C2' | C1' | S1' | 127.9° | 120.8° |
| C1' | C2' | C3' | 121.9° | 121.7° |
| C1' | C2' | S2' | 116.9° | 118.3° |
| C1' | S1' | MO | 97.5° | 107.4° |
| S1' | MO | S2' | 86.5° | 82.7° |
| S1' | MO | O1 | 160.7° | 176.6° |
| S1' | MO | S | 108.2° | 89.8° |
| S1' | MO | O2 | 87.1° | 93.9° |
| C3' | C2' | S2' | 121.2° | 120.0° |
| C2' | C3' | O3' | 113.3° | 113.6° |
| C2' | C3' | C4' | 112.5° | 114.2° |
| C2' | C3' | H9 | 110.3° | 107.4° |
| C2' | S2' | MO | 108.5° | 107.6° |
| S2' | MO | O1 | 96.9° | 93.9° |
| S2' | MO | S | 105.4° | 89.8° |
| S2' | MO | O2 | 169.1° | 176.6° |
| O3' | C3' | C4' | 94.4° | 104.0° |
| O3' | C3' | H9 | 112.3° | 109.1° |
| C3' | C4' | O4' | 119.4° | 110.0° |
| C4' | C3' | H9 | 113.3° | 108.3° |
| C3' | C4' | H10 | 106.9° | 109.2° |
| C3' | C4' | H11 | 107.0° | 109.6° |
| C4' | O4' | P | 150.8° | 122.0° |
| O4' | C4' | H10 | 106.9° | 110.1° |
| O4' | C4' | H11 | 106.9° | 109.9° |
| O4' | P | O3P | 118.9° | 112.5° |
| O4' | P | O2P | 123.5° | 106.0° |
| O4' | P | O1P | 89.8° | 106.8° |
| O3P | P | O2P | 105.2° | 112.2° |
| O3P | P | O1P | 106.8° | 112.4° |
| O2P | P | O1P | 110.2° | 106.4° |
| P | O2P | H13 | 109.5° | 109.4° |
| P | O1P | H12 | 109.5° | 109.5° |
| O1 | MO | S | 89.3° | 90.6° |
| O1 | MO | O2 | 86.4° | 89.4° |
| MO | O1 | H15 | 109.5° | 110.4° |
| S | MO | O2 | 84.9° | 90.6° |
| MO | O2 | H16 | 109.5° | 110.4° |
| H1 | N2 | H2 | 120.0° | 119.3° |
| H10 | C4' | H11 | 109.5° | 108.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C2 | N2 | N3 | 179.8° | 179.7° |
| N1 | C2 | N3 | C4 | 0.5° | 0.7° |
| C2 | N1 | C10 | N8 | 179.3° | 180.0° |
| C2 | N1 | C10 | C9 | 0.1° | 2.1° |
| N1 | C2 | N2 | H1 | 0.0° | 0.0° |
| N1 | C2 | N2 | H2 | 180.0° | 179.9° |
| N1 | C2 | N3 | H4 | 179.5° | 179.6° |
| C10 | N1 | C2 | N2 | 179.5° | 179.2° |
| C10 | N1 | C2 | N3 | 0.7° | 1.2° |
| N1 | C10 | C9 | C4 | 0.6° | 2.5° |
| N1 | C10 | C9 | N5 | 178.8° | 179.4° |
| N1 | C10 | N8 | C7 | 176.9° | 170.3° |
| N1 | C10 | N8 | C9 | 179.4° | 178.0° |
| N1 | C10 | N8 | H7 | 61.0° | 9.9° |
| N2 | C2 | N3 | C4 | 179.7° | 179.7° |
| C2 | N2 | H1 | H2 | 180.0° | 179.9° |
| N2 | C2 | N3 | H4 | 0.4° | 0.0° |
| C2 | N3 | C4 | H4 | 180.0° | 179.7° |
| C2 | N3 | C4 | C9 | 0.3° | 1.0° |
| C2 | N3 | C4 | O4 | 179.6° | 179.6° |
| N3 | C2 | N2 | H1 | 179.8° | 179.6° |
| N3 | C2 | N2 | H2 | 0.1° | 0.4° |
| N3 | C4 | C9 | O4 | 179.9° | 178.6° |
| N3 | C4 | C9 | N5 | 178.6° | 179.9° |
| N3 | C4 | C9 | C10 | 0.8° | 1.8° |
| C4 | C9 | N5 | C10 | 179.3° | 178.0° |
| C4 | C9 | N5 | C6 | 154.8° | 170.6° |
| C4 | C9 | C10 | N8 | 179.9° | 179.7° |
| C4 | C9 | N5 | H3 | 33.8° | 9.2° |
| C9 | C4 | N3 | H4 | 179.8° | 179.3° |
| O4 | C4 | C9 | N5 | 1.6° | 1.6° |
| O4 | C4 | C9 | C10 | 179.1° | 179.6° |
| O4 | C4 | N3 | H4 | 0.4° | 0.7° |
| C9 | N5 | C6 | H3 | 121.0° | 179.7° |
| C9 | N5 | C6 | C7 | 47.4° | 27.8° |
| C9 | N5 | C6 | C1' | 173.7° | 154.1° |
| N5 | C9 | C10 | N8 | 0.6° | 1.6° |
| C9 | N5 | C6 | H5 | 66.9° | 89.0° |
| N5 | C6 | C7 | C1' | 125.7° | 125.5° |
| N5 | C6 | C7 | H5 | 115.2° | 117.6° |
| N5 | C6 | C1' | H5 | 118.6° | 117.2° |
| N5 | C6 | C7 | O3' | 68.4° | 86.8° |
| N5 | C6 | C7 | N8 | 48.2° | 34.0° |
| C6 | N5 | C9 | C10 | 25.9° | 11.4° |
| N5 | C6 | C1' | C2' | 95.4° | 113.9° |
| N5 | C6 | C1' | S1' | 83.2° | 68.2° |
| N5 | C6 | C7 | H6 | 172.5° | 153.4° |
| C7 | C6 | C1' | H5 | 117.6° | 116.4° |
| C6 | C7 | O3' | N8 | 122.1° | 123.8° |
| C6 | C7 | O3' | H6 | 117.2° | 119.8° |
| C6 | C7 | N8 | H6 | 122.8° | 120.0° |
| C6 | C7 | N8 | C10 | 26.8° | 28.1° |
| C7 | C6 | C1' | C2' | 28.4° | 12.5° |
| C7 | C6 | C1' | S1' | 153.0° | 165.4° |
| C6 | C7 | O3' | C3' | 60.4° | 50.2° |
| C7 | C6 | N5 | H3 | 168.4° | 152.5° |
| C6 | C7 | N8 | H7 | 95.2° | 151.6° |
| C1' | C6 | C7 | O3' | 57.3° | 38.7° |
| C1' | C6 | C7 | N8 | 173.9° | 159.5° |
| C6 | C1' | C2' | S1' | 178.4° | 177.9° |
| C6 | C1' | S1' | MO | 169.0° | 174.5° |
| C6 | C1' | C2' | C3' | 0.4° | 7.8° |
| C6 | C1' | C2' | S2' | 179.6° | 171.5° |
| C1' | C6 | N5 | H3 | 65.3° | 26.1° |
| C1' | C6 | C7 | H6 | 61.8° | 81.1° |
| O3' | C7 | N8 | H6 | 120.7° | 117.1° |
| O3' | C7 | N8 | C10 | 89.7° | 94.8° |
| C7 | O3' | C3' | C2' | 34.0° | 30.2° |
| C7 | O3' | C3' | C4' | 150.8° | 154.9° |
| O3' | C7 | C6 | H5 | 176.4° | 155.6° |
| O3' | C7 | N8 | H7 | 148.3° | 85.5° |
| C7 | O3' | C3' | H9 | 91.8° | 89.6° |
| C7 | N8 | C10 | H7 | 122.0° | 179.8° |
| C7 | N8 | C10 | C9 | 2.5° | 11.7° |
| N8 | C7 | O3' | C3' | 177.5° | 174.0° |
| N8 | C7 | C6 | H5 | 67.0° | 83.6° |
| C10 | N8 | C7 | H6 | 149.6° | 148.2° |
| C10 | C9 | N5 | H3 | 146.9° | 168.8° |
| C9 | C10 | N8 | H7 | 119.6° | 168.1° |
| C2' | C1' | S1' | MO | 9.4° | 7.5° |
| C1' | C2' | C3' | S2' | 180.0° | 179.2° |
| C1' | C2' | S2' | MO | 13.3° | 16.9° |
| C1' | C2' | C3' | O3' | 0.1° | 0.8° |
| C1' | C2' | C3' | C4' | 105.7° | 118.3° |
| C2' | C1' | C6 | H5 | 146.0° | 128.9° |
| C1' | C2' | C3' | H9 | 126.7° | 121.6° |
| S1' | C1' | C2' | C3' | 178.8° | 174.4° |
| S1' | C1' | C2' | S2' | 1.2° | 6.4° |
| C1' | S1' | MO | S2' | 12.6° | 12.9° |
| C1' | S1' | MO | O1 | 113.5° | 19.0° |
| C1' | S1' | MO | S | 92.5° | 77.0° |
| C1' | S1' | MO | O2 | 176.1° | 167.5° |
| S1' | C1' | C6 | H5 | 35.4° | 49.1° |
| S1' | MO | S2' | C2' | 13.9° | 15.6° |
| S1' | MO | S2' | O1 | 160.9° | 179.6° |
| S1' | MO | S2' | S | 107.9° | 89.8° |
| S1' | MO | S2' | O2 | 53.7° | 6.5° |
| S1' | MO | O1 | S | 155.3° | 95.9° |
| S1' | MO | O1 | O2 | 70.4° | 173.5° |
| S1' | MO | S | O2 | 85.2° | 93.9° |
| S1' | MO | O1 | H15 | 180.0° | 49.6° |
| S1' | MO | O2 | H16 | 108.6° | 43.6° |
| C3' | C2' | S2' | MO | 166.6° | 163.9° |
| C2' | C3' | O3' | C4' | 116.8° | 124.8° |
| C2' | C3' | O3' | H9 | 125.8° | 119.8° |
| C2' | C3' | C4' | H9 | 126.0° | 119.7° |
| C2' | C3' | C4' | O4' | 144.4° | 169.0° |
| C2' | C3' | C4' | H10 | 23.1° | 70.1° |
| C2' | C3' | C4' | H11 | 94.2° | 48.1° |
| S2' | C2' | C3' | O3' | 179.8° | 178.4° |
| S2' | C2' | C3' | C4' | 74.3° | 62.6° |
| C2' | S2' | MO | O1 | 174.9° | 164.7° |
| C2' | S2' | MO | S | 94.0° | 74.2° |
| C2' | S2' | MO | O2 | 67.6° | 22.1° |
| S2' | C2' | C3' | H9 | 53.3° | 57.6° |
| S2' | MO | O1 | S | 105.5° | 89.8° |
| S2' | MO | O1 | O2 | 169.6° | 179.6° |
| S2' | MO | S | O2 | 176.6° | 176.6° |
| S2' | MO | O1 | H15 | 80.8° | 43.5° |
| S2' | MO | O2 | H16 | 162.2° | 50.0° |
| O3' | C3' | C4' | H9 | 116.5° | 116.0° |
| O3' | C3' | C4' | O4' | 98.1° | 66.7° |
| C3' | O3' | C7 | H6 | 56.8° | 69.5° |
| O3' | C3' | C4' | H10 | 140.5° | 54.3° |
| O3' | C3' | C4' | H11 | 23.3° | 172.4° |
| C3' | C4' | O4' | H10 | 121.4° | 120.4° |
| C3' | C4' | O4' | H11 | 121.4° | 120.7° |
| C3' | C4' | O4' | P | 22.0° | 167.6° |
| C3' | C4' | H10 | H11 | 115.5° | 119.1° |
| C4' | O4' | P | O3P | 138.9° | 57.8° |
| C4' | O4' | P | O2P | 2.5° | 179.1° |
| C4' | O4' | P | O1P | 111.9° | 66.0° |
| O4' | C4' | C3' | H9 | 18.5° | 49.3° |
| O4' | C4' | H10 | H11 | 115.5° | 120.0° |
| O4' | P | O3P | O2P | 143.5° | 119.5° |
| O4' | P | O3P | O1P | 99.4° | 120.6° |
| O4' | P | O2P | O1P | 103.9° | 113.5° |
| P | O4' | C4' | H10 | 143.4° | 72.0° |
| P | O4' | C4' | H11 | 99.4° | 46.9° |
| O4' | P | O1P | H12 | 120.2° | 60.0° |
| O4' | P | O2P | H13 | 141.3° | 180.0° |
| O3P | P | O2P | O1P | 114.8° | 123.3° |
| O3P | P | O1P | H12 | 0.0° | 176.1° |
| O3P | P | O2P | H13 | 0.0° | 56.8° |
| O2P | P | O1P | H12 | 113.8° | 52.9° |
| O1P | P | O2P | H13 | 114.8° | 66.5° |
| O1 | MO | S | O2 | 86.5° | 89.4° |
| O1 | MO | O2 | H16 | 89.6° | 136.8° |
| S | MO | O1 | H15 | 24.7° | 46.3° |
| S | MO | O2 | H16 | 0.0° | 46.2° |
| O2 | MO | O1 | H15 | 109.6° | 136.9° |
| H3 | N5 | C6 | H5 | 54.1° | 90.8° |
| H5 | C6 | C7 | H6 | 57.3° | 35.9° |
| H6 | C7 | N8 | H7 | 27.6° | 31.6° |
| H9 | C3' | C4' | H10 | 102.9° | 170.3° |
| H9 | C3' | C4' | H11 | 139.8° | 71.6° |
