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ZKD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1BN1sing1.47Å1.50Å
C6N1sing1.37Å1.42Å
N1C2sing1.35Å1.43Å
C2O2doub1.22Å1.24Å
C2N3sing1.35Å1.42Å
C4N3sing1.35Å1.41Å
C5C4sing1.42Å1.40Å
C4O4doub1.22Å1.23Å
C6C5doub1.35Å1.41Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
O2APAdoub1.48Å1.50Å
O3APAsing1.61Å1.62Å
PAO1Asing1.61Å1.50Å
PAO5Bsing1.61Å1.59Å
O1BPBdoub1.48Å1.49Å
O3APBsing1.61Å1.61Å
O2BPBsing1.61Å1.48Å
PBS1'sing2.12Å2.28Å
S1'C1'sing1.81Å1.83Å
C2'C1'sing1.53Å1.52Å
C1'O5'sing1.43Å1.46Å
C1'H1'sing1.09Å1.10Å
O1AHO1Asing0.97Å0.95Å
C2BC1Bsing1.55Å1.54Å
O4BC1Bsing1.44Å1.46Å
C1BH1Bsing1.09Å1.10Å
C7'N2'sing1.35Å1.35Å
N2'C2'sing1.46Å1.37Å
C2BO2'sing1.43Å1.41Å
O2'HO2'sing0.97Å0.95Å
C2'C3'sing1.53Å1.54Å
C3BC2Bsing1.55Å1.51Å
C2BH2Bsing1.09Å1.10Å
O2BHO2Bsing0.97Å0.95Å
O3'C3'sing1.43Å1.42Å
C3'C4'sing1.53Å1.54Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4BC3Bsing1.54Å1.52Å
C3BO3Bsing1.43Å1.44Å
C3BH3Bsing1.09Å1.10Å
O3BHO3Bsing0.97Å0.95Å
C4'O4'sing1.43Å1.42Å
C4'C5'sing1.53Å1.55Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
C5BC4Bsing1.53Å1.51Å
C4BO4Bsing1.44Å1.45Å
C4BH4Bsing1.09Å1.10Å
O5'C5'sing1.43Å1.49Å
C5'C6'sing1.53Å1.55Å
C5'H5'sing1.09Å1.10Å
O5BC5Bsing1.43Å1.41Å
C5BH5Bsing1.09Å1.10Å
C5BH5BAsing1.09Å1.10Å
C6'O6'sing1.43Å1.45Å
C6'H6'sing1.09Å1.10Å
C6'H6'Asing1.09Å1.10Å
O6'HO6'sing0.97Å0.95Å
O7'C7'doub1.21Å1.23Å
C7'C8'sing1.51Å1.53Å
C8'H8'sing1.09Å1.10Å
C8'H8'Asing1.09Å1.10Å
C8'H8'Bsing1.09Å1.10Å
N3HN3sing0.97Å1.00Å
N2'HN2'sing0.97Å1.00Å
C2'H2'sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1BN1C6121.9°119.7°
C1BN1C2118.8°119.7°
N1C1BC2B126.6°110.6°
N1C1BO4B103.4°110.7°
N1C1BH1B100.5°110.5°
C6N1C2119.2°120.7°
N1C6C5119.7°119.7°
N1C6H6120.1°120.1°
N1C2O2119.9°119.6°
N1C2N3120.0°120.9°
O2C2N3120.1°119.5°
C2N3C4120.2°120.3°
C2N3HN3119.9°119.8°
N3C4C5119.1°119.4°
N3C4O4120.0°120.3°
C4N3HN3119.9°119.9°
C5C4O4120.8°120.3°
C4C5C6121.7°119.1°
C4C5H5119.2°120.5°
C6C5H5119.2°120.4°
C5C6H6120.1°120.2°
O2APAO3A109.6°109.5°
O2APAO1A120.8°109.4°
O2APAO5B107.2°109.5°
O3APAO1A108.3°109.5°
O3APAO5B99.7°109.5°
PAO3APB121.2°134.0°
O1APAO5B109.1°109.5°
PAO1AHO1A109.5°114.0°
PAO5BC5B121.6°123.0°
O1BPBO3A104.7°109.5°
O1BPBO2B120.0°109.5°
O1BPBS1'110.1°109.5°
O3APBO2B106.0°109.5°
O3APBS1'99.8°109.5°
O2BPBS1'113.6°109.5°
PBO2BHO2B109.5°114.0°
PBS1'C1'111.8°103.0°
S1'C1'C2'108.8°109.5°
S1'C1'O5'104.8°109.5°
S1'C1'H1'113.6°109.5°
C2'C1'O5'111.4°109.4°
C2'C1'H1'107.3°109.4°
C1'C2'N2'125.6°109.5°
C1'C2'C3'110.7°109.2°
C1'C2'H2'115.5°109.5°
O5'C1'H1'111.1°109.5°
C1'O5'C5'116.3°114.2°
C2BC1BO4B103.1°103.7°
C2BC1BH1B100.8°110.6°
C1BC2BO2'112.8°111.0°
C1BC2BC3B97.0°102.1°
C1BC2BH2B114.2°110.8°
O4BC1BH1B125.0°110.6°
C1BO4BC4B108.1°106.9°
C7'N2'C2'131.8°120.0°
N2'C7'O7'122.3°120.0°
N2'C7'C8'120.0°120.0°
C7'N2'HN2'114.1°120.0°
N2'C2'C3'123.6°109.6°
C2'N2'HN2'114.1°120.0°
N2'C2'H2'24.5°109.5°
C2BO2'HO2'109.5°114.0°
O2'C2BC3B105.9°111.0°
O2'C2BH2B106.5°110.8°
C2'C3'O3'111.6°109.5°
C2'C3'C4'104.3°109.1°
C2'C3'H3'112.5°109.6°
C3'C2'H2'128.9°109.6°
C3BC2BH2B120.4°110.9°
C2BC3BC4B100.9°104.2°
C2BC3BO3B111.0°110.4°
C2BC3BH3B113.2°110.5°
O3'C3'C4'112.4°109.6°
O3'C3'H3'104.5°109.6°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'111.8°109.6°
C3'C4'O4'113.2°109.5°
C3'C4'C5'110.2°109.2°
C3'C4'H4'107.1°109.5°
C4BC3BO3B107.1°110.5°
C4BC3BH3B116.7°110.7°
C3BC4BC5B103.6°109.8°
C3BC4BO4B104.3°107.4°
C3BC4BH4B118.2°109.8°
O3BC3BH3B107.7°110.4°
C3BO3BHO3B109.5°114.0°
O4'C4'C5'111.4°109.6°
O4'C4'H4'105.7°109.5°
C4'O4'HO4'109.5°113.9°
C5'C4'H4'109.0°109.6°
C4'C5'O5'112.3°109.4°
C4'C5'C6'111.1°109.5°
C4'C5'H5'106.1°109.5°
C5BC4BO4B114.7°110.0°
C5BC4BH4B108.5°110.0°
C4BC5BO5B107.9°109.5°
C4BC5BH5B110.0°109.5°
C4BC5BH5BA110.4°109.5°
O4BC4BH4B107.8°109.7°
O5'C5'C6'108.6°109.5°
O5'C5'H5'108.7°109.5°
C6'C5'H5'109.9°109.5°
C5'C6'O6'110.9°109.4°
C5'C6'H6'109.0°109.4°
C5'C6'H6'A108.7°109.5°
O5BC5BH5B110.0°109.5°
O5BC5BH5BA110.3°109.5°
H5BC5BH5BA108.2°109.4°
O6'C6'H6'109.0°109.5°
O6'C6'H6'A108.7°109.5°
C6'O6'HO6'109.5°114.0°
H6'C6'H6'A110.6°109.5°
O7'C7'C8'117.8°120.0°
C7'C8'H8'109.5°109.5°
C7'C8'H8'A109.5°109.5°
C7'C8'H8'B109.5°109.5°
H8'C8'H8'A109.4°109.4°
H8'C8'H8'B109.5°109.5°
H8'AC8'H8'B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1BN1C6C2177.9°179.7°
C1BN1C2O21.6°0.3°
C1BN1C2N3179.4°179.7°
C1BN1C6C5179.3°179.7°
C1BN1C6H60.7°0.3°
N1C1BC2BO4B118.1°118.6°
N1C1BC2BH1B111.9°122.8°
N1C1BO4BH1B113.3°122.8°
N1C1BC2BO2'86.3°86.2°
N1C1BC2BC3B163.2°155.5°
N1C1BC2BH2B35.4°37.4°
N1C1BO4BC4B157.1°158.4°
C6N1C2O2179.6°179.9°
C6N1C2N31.5°0.0°
N1C6C5C40.6°0.0°
N1C6C5H6180.0°180.0°
N1C6C5H5179.5°179.9°
C6N1C1BC2B75.0°63.2°
C6N1C1BO4B42.9°51.1°
C6N1C1BH1B173.0°174.0°
N1C2O2N3178.9°180.0°
N1C2N3C40.8°0.1°
C2N1C6C51.4°0.0°
C2N1C6H6178.6°180.0°
C2N1C1BC2B107.1°117.1°
C2N1C1BO4B135.0°128.5°
C2N1C1BH1B4.9°5.7°
N1C2N3HN3179.2°180.0°
O2C2N3C4179.7°179.9°
O2C2N3HN30.3°0.0°
C2N3C4HN3180.0°179.9°
C2N3C4C50.0°0.0°
C2N3C4O4178.9°180.0°
N3C4C5O4178.9°179.9°
N3C4C5C60.2°0.0°
N3C4C5H5179.8°179.9°
C4C5C6H5180.0°179.9°
C4C5C6H6179.4°180.0°
C5C4N3HN3180.0°180.0°
O4C4C5C6179.0°180.0°
O4C4C5H51.0°0.0°
O4C4N3HN31.1°0.1°
H5C5C6H60.5°0.1°
O2APAO3AO1A133.7°120.0°
O2APAO3AO5B112.3°120.0°
O2APAO1AO5B124.9°120.0°
O2APAO3APB166.0°44.9°
O2APAO1AHO1A57.7°180.0°
O2APAO5BC5B92.3°55.0°
O3APAO1AO5B107.6°120.0°
PAO3APBO1B68.6°60.0°
PAO3APBO2B163.6°59.9°
PAO3APBS1'45.3°179.9°
O3APAO1AHO1A69.8°60.0°
O3APAO5BC5B153.5°175.0°
O1APAO3APB32.3°75.0°
O1APAO5BC5B40.2°65.0°
O5BPAO3APB81.7°165.0°
O5BPAO1AHO1A177.4°60.0°
PAO5BC5BC4B176.7°180.0°
PAO5BC5BH5B56.8°60.0°
PAO5BC5BH5BA62.6°60.0°
O1BPBO3AO2B127.8°120.0°
O1BPBO3AS1'114.0°120.0°
O1BPBO2BS1'133.3°120.1°
O1BPBS1'C1'92.3°60.0°
O1BPBO2BHO2B132.8°180.0°
O3APBO2BS1'108.6°120.0°
O3APBS1'C1'157.9°180.0°
O3APBO2BHO2B109.1°60.0°
O2BPBS1'C1'45.5°60.0°
PBS1'C1'C2'39.4°170.0°
PBS1'C1'O5'158.7°70.0°
PBS1'C1'H1'79.9°50.1°
S1'PBO2BHO2B0.5°59.9°
S1'C1'C2'O5'115.1°120.0°
S1'C1'C2'H1'123.2°120.0°
S1'C1'O5'H1'123.0°120.1°
S1'C1'C2'N2'126.6°62.5°
S1'C1'C2'C3'57.0°177.6°
S1'C1'O5'C5'70.8°178.8°
S1'C1'C2'H2'100.5°57.6°
C2'C1'O5'H1'119.5°119.9°
C1'C2'N2'C7'2.1°85.0°
C1'C2'N2'C3'176.0°119.7°
C1'C2'N2'H2'73.0°120.1°
C1'C2'C3'H2'153.7°119.9°
C1'C2'C3'O3'172.8°62.9°
C1'C2'C3'C4'65.7°56.9°
C1'C2'C3'H3'55.6°176.9°
C2'C1'O5'C5'46.7°61.2°
C1'C2'N2'HN2'177.9°95.0°
O5'C1'C2'N2'118.3°177.5°
O5'C1'C2'C3'58.1°57.5°
C1'O5'C5'C4'44.8°61.2°
C1'O5'C5'C6'168.2°58.8°
C1'O5'C5'H5'72.2°178.8°
O5'C1'C2'H2'144.4°62.4°
H1'C1'C2'N2'3.4°57.6°
H1'C1'C2'C3'179.8°62.4°
H1'C1'O5'C5'166.2°58.7°
H1'C1'C2'H2'22.7°177.7°
C2BC1BO4BH1B113.4°118.6°
C1BC2BO2'C3B104.8°112.7°
C1BC2BO2'H2B126.0°123.6°
C1BC2BO2'HO2'21.2°180.0°
C1BC2BC3BH2B123.3°118.1°
C1BC2BC3BC4B49.2°20.8°
C1BC2BC3BO3B64.0°97.9°
C1BC2BC3BH3B174.8°139.7°
C2BC1BO4BC4B23.9°39.8°
O4BC1BC2BO2'155.6°155.2°
O4BC1BC2BC3B45.2°36.9°
O4BC1BC2BH2B82.6°81.3°
C1BO4BC4BC3B7.8°26.3°
C1BO4BC4BC5B104.8°145.8°
C1BO4BC4BH4B134.3°93.1°
H1BC1BC2BO2'25.6°36.6°
H1BC1BC2BC3B84.9°81.7°
H1BC1BC2BH2B147.3°160.2°
H1BC1BO4BC4B89.6°78.8°
C7'N2'C2'HN2'180.0°180.0°
C7'N2'C2'C3'178.1°155.3°
N2'C7'O7'C8'179.5°180.0°
N2'C7'C8'H8'95.6°0.1°
N2'C7'C8'H8'A24.4°120.0°
N2'C7'C8'H8'B144.4°120.0°
C7'N2'C2'H2'70.9°35.1°
N2'C2'C3'H2'29.8°120.2°
N2'C2'C3'O3'10.7°57.0°
N2'C2'C3'C4'110.8°176.9°
N2'C2'C3'H3'127.9°63.2°
C2'N2'C7'O7'178.2°0.0°
C2'N2'C7'C8'1.3°180.0°
O2'C2BC3BH2B120.5°123.6°
O2'C2BC3BC4B165.4°139.1°
O2'C2BC3BO3B52.1°20.4°
O2'C2BC3BH3B69.1°102.0°
HO2'O2'C2BC3B126.1°67.3°
HO2'O2'C2BH2B104.8°56.4°
C2'C3'O3'C4'116.7°119.6°
C2'C3'O3'H3'121.9°120.2°
C2'C3'C4'H3'121.8°119.9°
C2'C3'O3'HO3'95.8°180.0°
C2'C3'C4'O4'171.7°63.0°
C2'C3'C4'C5'62.7°57.0°
C2'C3'C4'H4'55.7°177.0°
C3'C2'N2'HN2'1.9°24.7°
C2BC3BC4BO3B116.2°118.6°
C2BC3BC4BH3B123.2°118.7°
C2BC3BO3BH3B124.4°122.5°
C2BC3BO3BHO3B48.8°61.5°
C2BC3BC4BC5B83.6°121.5°
C2BC3BC4BO4B36.8°1.9°
C2BC3BC4BH4B156.5°117.4°
H2BC2BC3BC4B74.1°97.3°
H2BC2BC3BO3B172.6°144.1°
H2BC2BC3BH3B51.4°21.6°
O3'C3'C4'H3'117.1°120.2°
O3'C3'C4'O4'50.7°177.2°
O3'C3'C4'C5'176.3°62.9°
O3'C3'C4'H4'65.3°57.1°
O3'C3'C2'H2'19.0°177.2°
C4'C3'O3'HO3'21.0°60.4°
C3'C4'O4'C5'124.9°119.7°
C3'C4'O4'H4'116.9°120.1°
C3'C4'C5'H4'117.2°119.9°
C3'C4'O4'HO4'178.1°180.0°
C3'C4'C5'O5'53.5°57.6°
C3'C4'C5'C6'175.4°62.4°
C3'C4'C5'H5'65.1°177.6°
C4'C3'C2'H2'140.6°63.0°
H3'C3'O3'HO3'142.3°59.8°
H3'C3'C4'O4'66.4°56.9°
H3'C3'C4'C5'59.1°176.9°
H3'C3'C4'H4'177.5°63.1°
H3'C3'C2'H2'98.1°57.0°
C4BC3BO3BH3B126.3°122.8°
C4BC3BO3BHO3B60.5°176.2°
C3BC4BC5BO4B113.0°118.0°
C3BC4BC5BH4B126.4°121.0°
C3BC4BO4BH4B126.5°119.3°
C3BC4BC5BO5B97.6°175.0°
C3BC4BC5BH5B22.4°55.0°
C3BC4BC5BH5BA141.8°65.0°
O3BC3BC4BC5B160.3°119.9°
O3BC3BC4BO4B79.3°120.5°
O3BC3BC4BH4B40.3°1.3°
H3BC3BO3BHO3B173.2°61.0°
H3BC3BC4BC5B39.6°2.8°
H3BC3BC4BO4B160.0°116.8°
H3BC3BC4BH4B80.4°123.9°
O4'C4'C5'H4'116.2°120.2°
O4'C4'C5'O5'179.9°62.3°
O4'C4'C5'C6'58.0°177.8°
O4'C4'C5'H5'61.4°57.8°
C5'C4'O4'HO4'57.0°60.3°
C4'C5'O5'C6'123.3°120.0°
C4'C5'O5'H5'117.1°120.0°
C4'C5'C6'H5'117.2°120.0°
C4'C5'C6'O6'66.4°173.4°
C4'C5'C6'H6'53.6°53.4°
C4'C5'C6'H6'A174.2°66.6°
H4'C4'O4'HO4'61.2°59.9°
H4'C4'C5'O5'63.7°177.5°
H4'C4'C5'C6'58.2°57.6°
H4'C4'C5'H5'177.7°62.4°
C5BC4BO4BH4B120.9°121.2°
C4BC5BO5BH5B120.0°120.0°
C4BC5BO5BH5BA120.6°120.0°
C4BC5BH5BH5BA120.7°120.0°
O4BC4BC5BO5B149.4°67.0°
O4BC4BC5BH5B90.6°173.0°
O4BC4BC5BH5BA28.8°53.0°
H4BC4BC5BO5B28.8°54.0°
H4BC4BC5BH5B148.8°66.0°
H4BC4BC5BH5BA91.8°174.0°
O5'C5'C6'H5'118.9°120.1°
O5'C5'C6'O6'169.6°66.7°
O5'C5'C6'H6'70.4°173.3°
O5'C5'C6'H6'A50.2°53.3°
C5'C6'O6'H6'120.0°119.9°
C5'C6'O6'H6'A119.4°120.0°
C5'C6'H6'H6'A119.4°120.0°
C5'C6'O6'HO6'176.9°180.0°
H5'C5'C6'O6'50.7°53.4°
H5'C5'C6'H6'170.8°66.6°
H5'C5'C6'H6'A68.7°173.4°
O5BC5BH5BH5BA120.6°120.0°
O6'C6'H6'H6'A119.4°120.1°
H6'C6'O6'HO6'63.1°60.1°
H6'AC6'O6'HO6'57.5°60.0°
O7'C7'C8'H8'83.9°179.9°
O7'C7'C8'H8'A156.2°60.1°
O7'C7'C8'H8'B36.2°60.0°
O7'C7'N2'HN2'1.8°180.0°
C7'C8'H8'H8'A120.0°119.9°
C7'C8'H8'H8'B120.0°120.1°
C7'C8'H8'AH8'B120.0°120.0°
C8'C7'N2'HN2'178.7°0.0°
H8'C8'H8'AH8'B120.0°120.0°
HN2'N2'C2'H2'109.1°144.9°

222415

PDB entries from 2024-07-10

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