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SummaryGeometryRelated PDB entries

ZDL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C06N05sing1.47Å1.46Å
N05C07sing1.48Å1.35Å
N05C04sing1.48Å1.32Å
C07N02sing1.48Å1.35Å
C04C03sing1.55Å1.36Å
N02C03sing1.49Å1.31Å
N02C01sing1.47Å1.45Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C03H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C04H7sing1.09Å1.10Å
C04H8sing1.09Å1.10Å
C06H10sing1.09Å1.10Å
C06H11sing1.09Å1.10Å
C06H12sing1.09Å1.10Å
C07H13sing1.09Å1.10Å
C07H14sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C06N05C07127.2°111.0°
C06N05C04125.1°111.0°
N05C06H10109.5°109.5°
N05C06H11109.5°109.4°
N05C06H12109.5°109.5°
C07N05C04106.7°107.0°
N05C07N02106.7°107.9°
N05C07H13110.2°109.7°
N05C07H14110.2°109.7°
N05C04C03107.0°103.5°
N05C04H7110.1°110.6°
N05C04H8110.1°110.7°
C07N02C03107.0°104.6°
C07N02C01125.2°111.0°
N02C07H13110.2°109.8°
N02C07H14110.2°109.8°
C04C03N02105.5°102.2°
C04C03H5110.5°110.9°
C04C03H6110.5°111.0°
C03C04H7110.1°110.6°
C03C04H8110.1°110.6°
C03N02C01122.3°111.0°
N02C03H5110.5°110.9°
N02C03H6110.5°110.9°
N02C01H1109.5°109.5°
N02C01H2109.5°109.5°
N02C01H3109.5°109.5°
H1C01H2109.5°109.4°
H1C01H3109.4°109.5°
H2C01H3109.5°109.5°
H5C03H6109.4°110.7°
H7C04H8109.5°110.6°
H10C06H11109.5°109.4°
H10C06H12109.4°109.5°
H11C06H12109.4°109.4°
H13C07H14109.4°109.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C06N05C07C04169.2°121.3°
C06N05C07N02169.3°120.9°
C06N05C04C03153.7°143.6°
C06N05C04H734.1°97.9°
C06N05C04H886.7°25.1°
N05C06H10H11120.0°119.9°
N05C06H10H12120.0°120.1°
N05C06H11H12120.0°120.0°
C06N05C07H1371.1°1.3°
C06N05C07H1449.7°119.5°
N05C07N02H13119.6°119.6°
N05C07N02H14119.6°119.5°
C07N05C04C0315.7°22.3°
N05C07N02C0316.6°24.0°
N05C07N02C01137.6°143.8°
C07N05C04H7135.3°140.9°
C07N05C04H8103.9°96.2°
C07N05C06H10180.0°59.9°
C07N05C06H1160.0°179.9°
C07N05C06H1260.0°60.2°
N05C07H13H14121.2°120.7°
C04N05C07N020.1°0.3°
N05C04C03H7119.6°118.5°
N05C04C03H8119.6°118.6°
N05C04C03N0226.2°36.5°
N05C04C03H593.2°81.7°
N05C04C03H6145.6°154.8°
N05C04H7H8121.1°123.1°
C04N05C06H1012.7°178.8°
C04N05C06H11107.3°61.2°
C04N05C06H12132.7°58.7°
C04N05C07H13119.7°120.0°
C04N05C07H14119.5°119.2°
C07N02C03C0426.1°36.8°
C07N02C03C01155.1°119.8°
C07N02C01H1180.0°55.8°
C07N02C01H260.0°64.1°
C07N02C01H360.0°175.9°
C07N02C03H593.3°81.4°
C07N02C03H6145.4°155.2°
N02C07H13H14121.3°120.9°
C04C03N02H5119.4°118.2°
C04C03N02H6119.4°118.4°
C04C03N02C01129.0°156.6°
C04C03H5H6121.8°123.7°
C03C04H7H8121.2°122.8°
C03N02C01H129.6°60.0°
C03N02C01H290.4°180.0°
C03N02C01H3149.6°60.0°
N02C03H5H6121.9°123.5°
N02C03C04H7145.8°155.1°
N02C03C04H893.4°82.1°
C03N02C07H13136.2°143.6°
C03N02C07H14103.0°95.5°
N02C01H1H2120.0°120.0°
N02C01H1H3120.0°120.0°
N02C01H2H3120.0°120.0°
C01N02C03H5111.6°38.4°
C01N02C03H69.6°85.0°
C01N02C07H1318.0°96.6°
C01N02C07H14102.9°24.2°
H1C01H2H3120.0°120.0°
H5C03C04H726.4°36.9°
H5C03C04H8147.2°159.7°
H6C03C04H794.8°86.7°
H6C03C04H826.0°36.2°
H10C06H11H12119.9°120.0°

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PDB entries from 2026-01-14

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