ZAS

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N53	N52	doub	1.12Å	1.26Å
N6	C6	sing	1.38Å	1.30Å
N52	N51	doub	1.12Å	1.25Å
C6	N1	doub	1.33Å	1.31Å	Aromatic
C6	C5	sing	1.41Å	1.37Å	Aromatic
N1	C2	sing	1.32Å	1.29Å	Aromatic
N51	C5'	sing	1.47Å	1.43Å
N7	C5	sing	1.35Å	1.31Å	Aromatic
N7	C8	doub	1.30Å	1.31Å	Aromatic
C5	C4	doub	1.40Å	1.36Å	Aromatic
C8	N9	sing	1.36Å	1.31Å	Aromatic
C2	N3	doub	1.32Å	1.29Å	Aromatic
C4	N3	sing	1.33Å	1.30Å	Aromatic
C4	N9	sing	1.37Å	1.28Å	Aromatic
O4'	C4'	sing	1.44Å	1.35Å
O4'	C1'	sing	1.44Å	1.39Å
N9	C1'	sing	1.46Å	1.44Å
C5'	C4'	sing	1.53Å	1.45Å
C4'	C3'	sing	1.54Å	1.51Å
C1'	C2'	sing	1.55Å	1.51Å
C2'	C3'	sing	1.54Å	1.50Å
C2'	O2'	sing	1.43Å	1.39Å
C3'	O3'	sing	1.43Å	1.39Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO8'	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
N6	H61	sing	0.97Å	1.00Å
N6	H62	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N53	N52	N51	179.0°	179.9°
N6	C6	N1	118.4°	120.8°
N6	C6	C5	123.9°	120.7°
C6	N6	H61	109.5°	120.0°
C6	N6	H62	109.5°	120.0°
N52	N51	C5'	115.2°	120.0°
N1	C6	C5	117.7°	118.5°
C6	N1	C2	121.8°	121.2°
C6	C5	N7	135.3°	134.7°
C6	C5	C4	118.2°	118.2°
N1	C2	N3	122.3°	122.4°
N1	C2	H2	118.9°	118.8°
N51	C5'	C4'	111.0°	109.5°
N51	C5'	H5'	109.1°	109.4°
N51	C5'	H5''	109.1°	109.5°
C5	N7	C8	108.3°	109.4°
N7	C5	C4	106.6°	107.1°
N7	C8	N9	108.7°	110.0°
N7	C8	H8	125.7°	125.0°
C5	C4	N3	120.9°	119.1°
C5	C4	N9	108.0°	106.0°
C8	N9	C4	108.4°	107.4°
C8	N9	C1'	129.2°	126.3°
N9	C8	H8	125.6°	125.0°
C2	N3	C4	119.2°	120.7°
N3	C2	H2	118.9°	118.8°
N3	C4	N9	131.1°	134.9°
C4	N9	C1'	122.4°	126.3°
C4'	O4'	C1'	107.0°	105.3°
O4'	C4'	C5'	111.9°	110.4°
O4'	C4'	C3'	105.0°	104.8°
O4'	C4'	H4'	116.4°	110.4°
O4'	C1'	N9	109.5°	110.4°
O4'	C1'	C2'	99.3°	104.7°
O4'	C1'	H1'	111.6°	110.4°
N9	C1'	C2'	115.2°	110.4°
N9	C1'	H1'	110.9°	110.5°
C5'	C4'	C3'	92.9°	110.4°
C4'	C5'	H5'	109.1°	109.4°
C4'	C5'	H5''	109.1°	109.5°
C5'	C4'	H4'	114.5°	110.3°
C4'	C3'	C2'	103.1°	104.1°
C4'	C3'	O3'	103.7°	110.6°
C3'	C4'	H4'	113.4°	110.4°
C4'	C3'	H3'	112.5°	110.5°
C1'	C2'	C3'	96.4°	104.1°
C1'	C2'	O2'	108.6°	110.5°
C1'	C2'	H2'	113.0°	110.6°
C2'	C1'	H1'	109.9°	110.3°
C3'	C2'	O2'	108.7°	110.5°
C2'	C3'	O3'	109.3°	110.5°
C2'	C3'	H3'	112.7°	110.6°
C3'	C2'	H2'	113.2°	110.6°
O2'	C2'	H2'	115.2°	110.4°
C2'	O2'	HO8'	109.5°	114.0°
O3'	C3'	H3'	114.5°	110.4°
C3'	O3'	HO3'	109.5°	114.0°
H5'	C5'	H5''	109.5°	109.5°
H61	N6	H62	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N53	N52	N51	C5'	66.2°	144.5°
N6	C6	N1	C5	179.2°	179.6°
N6	C6	N1	C2	179.0°	180.0°
N6	C6	C5	N7	1.0°	0.3°
N6	C6	C5	C4	179.4°	179.9°
C6	N6	H61	H62	120.0°	180.0°
N52	N51	C5'	C4'	116.4°	120.0°
N52	N51	C5'	H5'	123.4°	120.0°
N52	N51	C5'	H5''	3.8°	0.0°
N1	C6	C5	N7	179.8°	179.9°
N1	C6	C5	C4	0.2°	0.4°
C6	N1	C2	N3	0.5°	0.2°
C6	N1	C2	H2	179.5°	179.8°
N1	C6	N6	H61	0.0°	0.0°
N1	C6	N6	H62	120.0°	180.0°
C5	C6	N1	C2	0.2°	0.4°
C6	C5	N7	C4	179.6°	179.7°
C6	C5	N7	C8	179.2°	180.0°
C6	C5	C4	N3	0.3°	0.2°
C6	C5	C4	N9	179.0°	179.8°
C5	C6	N6	H61	179.2°	179.6°
C5	C6	N6	H62	60.8°	0.4°
N1	C2	N3	H2	180.0°	179.9°
N1	C2	N3	C4	0.4°	0.1°
N51	C5'	C4'	O4'	25.0°	69.6°
N51	C5'	C4'	H5'	120.2°	120.0°
N51	C5'	C4'	H5''	120.2°	120.0°
N51	C5'	C4'	C3'	132.4°	175.0°
N51	C5'	H5'	H5''	119.3°	120.0°
N51	C5'	C4'	H4'	110.2°	52.7°
C5	N7	C8	N9	0.0°	0.0°
N7	C5	C4	N3	180.0°	179.9°
N7	C5	C4	N9	0.7°	0.4°
C5	N7	C8	H8	180.0°	180.0°
C8	N7	C5	C4	0.4°	0.2°
N7	C8	N9	H8	180.0°	180.0°
N7	C8	N9	C4	0.4°	0.2°
N7	C8	N9	C1'	179.8°	180.0°
C5	C4	N9	C8	0.7°	0.4°
C5	C4	N3	C2	0.0°	0.0°
C5	C4	N3	N9	179.2°	179.6°
C5	C4	N9	C1'	179.9°	179.9°
C8	N9	C4	N3	179.9°	180.0°
C8	N9	C4	C1'	179.4°	179.8°
C8	N9	C1'	O4'	71.1°	23.5°
C8	N9	C1'	C2'	39.7°	91.8°
C8	N9	C1'	H1'	165.3°	145.9°
C2	N3	C4	N9	179.2°	179.5°
N3	C4	N9	C1'	0.6°	0.3°
C4	N3	C2	H2	179.6°	180.0°
C4	N9	C1'	O4'	109.6°	156.7°
C4	N9	C1'	C2'	139.6°	87.9°
C4	N9	C1'	H1'	14.0°	34.4°
C4	N9	C8	H8	179.6°	179.8°
C4'	O4'	C1'	N9	171.1°	159.3°
O4'	C4'	C5'	C3'	107.4°	115.4°
O4'	C4'	C5'	H4'	135.2°	122.3°
O4'	C4'	C3'	H4'	128.1°	118.9°
C4'	O4'	C1'	C2'	50.1°	40.5°
O4'	C4'	C3'	C2'	8.5°	23.9°
O4'	C4'	C3'	O3'	105.5°	142.6°
O4'	C4'	C5'	H5'	95.2°	50.4°
O4'	C4'	C5'	H5''	145.2°	170.4°
O4'	C4'	C3'	H3'	130.2°	94.9°
C4'	O4'	C1'	H1'	65.8°	78.3°
O4'	C1'	N9	C2'	110.9°	115.3°
O4'	C1'	N9	H1'	123.6°	122.4°
C1'	O4'	C4'	C5'	125.4°	159.4°
C1'	O4'	C4'	C3'	26.1°	40.5°
O4'	C1'	C2'	H1'	117.2°	118.8°
O4'	C1'	C2'	C3'	51.2°	24.0°
O4'	C1'	C2'	O2'	163.4°	142.6°
C1'	O4'	C4'	H4'	100.2°	78.4°
O4'	C1'	C2'	H2'	67.4°	94.8°
N9	C1'	C2'	H1'	126.0°	122.4°
N9	C1'	C2'	C3'	167.9°	142.8°
N9	C1'	C2'	O2'	79.9°	98.5°
N9	C1'	C2'	H2'	49.3°	24.0°
C1'	N9	C8	H8	0.2°	0.0°
C5'	C4'	C3'	H4'	118.3°	122.2°
C5'	C4'	C3'	C2'	105.1°	142.8°
C5'	C4'	C3'	O3'	141.0°	98.5°
C4'	C5'	H5'	H5''	119.3°	120.0°
C5'	C4'	C3'	H3'	16.7°	24.0°
C4'	C3'	C2'	C1'	35.7°	0.1°
C4'	C3'	C2'	O3'	109.8°	118.7°
C4'	C3'	C2'	H3'	121.6°	118.7°
C4'	C3'	C2'	O2'	147.9°	118.7°
C4'	C3'	O3'	H3'	123.0°	122.6°
C3'	C4'	C5'	H5'	12.1°	65.0°
C3'	C4'	C5'	H5''	107.4°	55.0°
C4'	C3'	O3'	HO3'	180.0°	61.4°
C4'	C3'	C2'	H2'	82.7°	118.8°
C1'	C2'	C3'	O2'	112.2°	118.6°
C1'	C2'	C3'	H2'	118.4°	118.8°
C1'	C2'	O2'	H2'	128.0°	122.7°
C1'	C2'	C3'	O3'	74.1°	118.7°
C1'	C2'	C3'	H3'	157.3°	118.7°
C1'	C2'	O2'	HO8'	180.0°	176.1°
C3'	C2'	O2'	H2'	128.3°	122.6°
C2'	C3'	O3'	H3'	127.5°	122.7°
C2'	C3'	C4'	H4'	136.6°	95.0°
C2'	C3'	O3'	HO3'	70.5°	176.1°
C3'	C2'	O2'	HO8'	76.2°	61.5°
C3'	C2'	C1'	H1'	66.0°	94.8°
O2'	C2'	C3'	O3'	38.0°	0.0°
O2'	C2'	C3'	H3'	90.5°	122.7°
O2'	C2'	C1'	H1'	46.2°	23.9°
O3'	C3'	C4'	H4'	22.7°	23.7°
O3'	C3'	C2'	H2'	167.4°	122.5°
H5'	C5'	C4'	H4'	129.5°	172.7°
H5''	C5'	C4'	H4'	10.0°	67.3°
H4'	C4'	C3'	H3'	101.6°	146.2°
H3'	C3'	O3'	HO3'	57.0°	61.2°
H3'	C3'	C2'	H2'	38.9°	0.1°
H2'	C2'	O2'	HO8'	52.0°	61.2°
H2'	C2'	C1'	H1'	175.4°	146.4°

Definition date:	2012-01-05
Last modified:	2024-05-08
Release status:	REL
Processing site:	RCSB
Derived from:	3V7W