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Summary Geometry Related PDB entries

Z0W

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	N3	doub	1.32Å	1.33Å	Aromatic
C2	N1	sing	1.32Å	1.34Å	Aromatic
N3	C4	sing	1.32Å	1.34Å	Aromatic
C4	C5	doub	1.39Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.46Å	Aromatic
C5	N2	sing	1.38Å	1.38Å	Aromatic
N1	C6	doub	1.33Å	1.35Å	Aromatic
C6	C7	sing	1.47Å	1.47Å	Aromatic
C7	C8	sing	1.39Å	1.40Å	Aromatic
C7	C12	doub	1.40Å	1.41Å	Aromatic
C8	C9	doub	1.38Å	1.39Å	Aromatic
C12	C11	sing	1.39Å	1.40Å	Aromatic
C12	N2	sing	1.38Å	1.38Å	Aromatic
C11	C10	doub	1.38Å	1.39Å	Aromatic
C10	C9	sing	1.39Å	1.39Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C11	H11	sing	1.08Å	1.08Å
C10	H10	sing	1.08Å	1.08Å
N2	HN2	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N3	C2	N1	128.3°	122.2°
C2	N3	C4	116.2°	121.4°
N3	C2	H2	115.9°	118.9°
C2	N1	C6	117.9°	120.3°
N1	C2	H2	115.9°	118.9°
N3	C4	C5	120.9°	118.8°
N3	C4	H4	119.5°	120.6°
C4	C5	C6	119.0°	118.0°
C4	C5	N2	130.6°	133.5°
C5	C4	H4	119.5°	120.6°
C6	C5	N2	110.4°	108.5°
C5	C6	N1	117.7°	119.3°
C5	C6	C7	103.3°	106.3°
C5	N2	C12	108.6°	110.2°
C5	N2	HN2	125.7°	124.9°
N1	C6	C7	139.0°	134.4°
C6	C7	C8	132.7°	133.5°
C6	C7	C12	108.3°	106.5°
C8	C7	C12	118.9°	120.0°
C7	C8	C9	119.7°	119.8°
C7	C8	H8	120.2°	120.1°
C7	C12	C11	121.3°	119.3°
C7	C12	N2	109.3°	108.4°
C8	C9	C10	120.8°	120.2°
C9	C8	H8	120.2°	120.1°
C8	C9	H9	119.6°	119.9°
C11	C12	N2	129.2°	132.3°
C12	C11	C10	118.4°	120.1°
C12	C11	H11	120.8°	120.0°
C12	N2	HN2	125.7°	124.8°
C11	C10	C9	120.8°	120.6°
C10	C11	H11	120.8°	120.0°
C11	C10	H10	119.6°	119.7°
C10	C9	H9	119.6°	119.9°
C9	C10	H10	119.6°	119.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N3	C2	N1	H2	180.0°	179.8°
C2	N3	C4	C5	0.8°	0.0°
N3	C2	N1	C6	1.0°	0.0°
C2	N3	C4	H4	179.2°	180.0°
N1	C2	N3	C4	0.4°	0.0°
C2	N1	C6	C5	0.3°	0.0°
C2	N1	C6	C7	180.0°	180.0°
N3	C4	C5	H4	180.0°	180.0°
N3	C4	C5	C6	1.4°	0.0°
N3	C4	C5	N2	178.1°	180.0°
C4	N3	C2	H2	179.5°	179.8°
C4	C5	C6	N2	179.6°	180.0°
C4	C5	C6	N1	0.8°	0.0°
C4	C5	C6	C7	179.0°	180.0°
C4	C5	N2	C12	179.5°	180.0°
C4	C5	N2	HN2	0.5°	0.1°
C5	C6	N1	C7	179.7°	180.0°
C5	C6	C7	C8	174.9°	180.0°
C5	C6	C7	C12	1.4°	0.0°
C6	C5	N2	C12	0.9°	0.0°
C6	C5	C4	H4	178.6°	180.0°
C6	C5	N2	HN2	179.0°	179.9°
N2	C5	C6	N1	178.8°	180.0°
N2	C5	C6	C7	1.4°	0.0°
C5	N2	C12	C7	0.0°	0.0°
C5	N2	C12	C11	176.9°	180.0°
C5	N2	C12	HN2	180.0°	179.9°
N2	C5	C4	H4	1.9°	0.0°
N1	C6	C7	C8	4.8°	0.0°
N1	C6	C7	C12	178.9°	180.0°
C6	N1	C2	H2	179.0°	179.8°
C6	C7	C8	C12	176.0°	180.0°
C6	C7	C8	C9	176.6°	180.0°
C6	C7	C12	C11	178.1°	180.0°
C6	C7	C12	N2	0.9°	0.0°
C6	C7	C8	H8	3.3°	0.0°
C7	C8	C9	H8	180.0°	180.0°
C8	C7	C12	C11	1.2°	0.0°
C8	C7	C12	N2	176.0°	180.0°
C7	C8	C9	C10	0.1°	0.0°
C7	C8	C9	H9	179.9°	180.0°
C12	C7	C8	C9	0.6°	0.0°
C7	C12	C11	N2	176.6°	180.0°
C7	C12	C11	C10	1.0°	0.0°
C12	C7	C8	H8	179.3°	180.0°
C7	C12	C11	H11	179.0°	180.0°
C7	C12	N2	HN2	179.9°	179.9°
C8	C9	C10	C11	0.3°	0.0°
C8	C9	C10	H9	180.0°	180.0°
C8	C9	C10	H10	179.7°	180.0°
C12	C11	C10	H11	180.0°	180.0°
C12	C11	C10	C9	0.3°	0.0°
C12	C11	C10	H10	179.8°	180.0°
C11	C12	N2	HN2	3.1°	0.1°
N2	C12	C11	C10	175.6°	180.0°
N2	C12	C11	H11	4.4°	0.0°
C11	C10	C9	H10	180.0°	180.0°
C11	C10	C9	H9	179.7°	180.0°
C10	C9	C8	H8	179.9°	180.0°
C9	C10	C11	H11	179.8°	180.0°
H8	C8	C9	H9	0.0°	0.0°
H9	C9	C10	H10	0.3°	0.0°
H11	C11	C10	H10	0.2°	0.0°

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PDB entries from 2026-01-14

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