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Summary Geometry Related PDB entries

Z07

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N10	C8	sing	1.38Å	1.38Å
F13	C11	sing	1.40Å	1.40Å
C8	N9	doub	1.29Å	1.29Å	Aromatic
C8	S7	sing	1.76Å	1.76Å	Aromatic
N9	C4	sing	1.35Å	1.35Å	Aromatic
F12	C11	sing	1.40Å	1.40Å
S7	C5	sing	1.76Å	1.76Å	Aromatic
C11	C3	sing	1.51Å	1.50Å
C11	F14	sing	1.40Å	1.40Å
C4	C3	doub	1.41Å	1.40Å	Aromatic
C4	C5	sing	1.40Å	1.39Å	Aromatic
C3	C2	sing	1.37Å	1.37Å	Aromatic
C5	C6	doub	1.39Å	1.39Å	Aromatic
C2	C1	doub	1.39Å	1.39Å	Aromatic
C6	C1	sing	1.38Å	1.38Å	Aromatic
C6	H1	sing	1.08Å	1.08Å
C1	H2	sing	1.08Å	1.08Å
C2	H3	sing	1.08Å	1.08Å
N10	H4	sing	0.97Å	1.00Å
N10	H5	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N10	C8	N9	125.1°	124.8°
N10	C8	S7	125.4°	124.8°
C8	N10	H4	109.5°	120.0°
C8	N10	H5	109.5°	120.0°
F13	C11	F12	109.7°	109.5°
F13	C11	C3	110.9°	109.5°
F13	C11	F14	109.9°	109.5°
N9	C8	S7	109.6°	110.4°
C8	N9	C4	117.9°	117.9°
C8	S7	C5	91.3°	90.4°
N9	C4	C3	128.2°	128.7°
N9	C4	C5	113.7°	112.9°
F12	C11	C3	109.1°	109.5°
F12	C11	F14	111.0°	109.4°
S7	C5	C4	107.6°	108.4°
S7	C5	C6	131.9°	131.1°
C3	C11	F14	106.2°	109.4°
C11	C3	C4	118.6°	119.7°
C11	C3	C2	120.2°	119.8°
C3	C4	C5	118.1°	118.4°
C4	C3	C2	121.2°	120.4°
C4	C5	C6	120.6°	120.4°
C3	C2	C1	120.1°	120.6°
C3	C2	H3	120.0°	119.7°
C5	C6	C1	120.0°	120.2°
C5	C6	H1	120.0°	119.9°
C2	C1	C6	120.1°	120.0°
C2	C1	H2	120.0°	120.0°
C1	C2	H3	120.0°	119.7°
C1	C6	H1	120.0°	119.9°
C6	C1	H2	120.0°	120.0°
H4	N10	H5	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N10	C8	N9	S7	179.9°	180.0°
N10	C8	N9	C4	179.9°	180.0°
N10	C8	S7	C5	179.9°	179.9°
C8	N10	H4	H5	120.0°	180.0°
F13	C11	F12	C3	121.7°	120.1°
F13	C11	F12	F14	121.6°	120.0°
F13	C11	C3	F14	119.4°	120.0°
F13	C11	C3	C4	15.7°	60.0°
F13	C11	C3	C2	165.0°	120.0°
N9	C8	S7	C5	0.0°	0.0°
C8	N9	C4	C3	179.9°	180.0°
C8	N9	C4	C5	0.1°	0.2°
N9	C8	N10	H4	0.0°	0.1°
N9	C8	N10	H5	120.0°	179.9°
S7	C8	N9	C4	0.1°	0.1°
C8	S7	C5	C4	0.0°	0.1°
C8	S7	C5	C6	180.0°	179.8°
S7	C8	N10	H4	179.8°	179.8°
S7	C8	N10	H5	59.8°	0.1°
N9	C4	C5	S7	0.0°	0.2°
N9	C4	C3	C11	0.4°	0.3°
N9	C4	C3	C5	179.8°	179.8°
N9	C4	C3	C2	179.8°	179.7°
N9	C4	C5	C6	180.0°	179.8°
F12	C11	C3	F14	119.7°	119.9°
F12	C11	C3	C4	136.6°	60.0°
F12	C11	C3	C2	44.0°	119.9°
S7	C5	C4	C3	179.8°	180.0°
S7	C5	C4	C6	180.0°	179.9°
S7	C5	C6	C1	179.9°	179.9°
S7	C5	C6	H1	0.1°	0.1°
C11	C3	C4	C2	179.3°	180.0°
C11	C3	C4	C5	179.8°	180.0°
C11	C3	C2	C1	179.8°	180.0°
C11	C3	C2	H3	0.2°	0.1°
F14	C11	C3	C4	103.7°	180.0°
F14	C11	C3	C2	75.6°	0.0°
C3	C4	C5	C6	0.1°	0.0°
C4	C3	C2	C1	0.5°	0.0°
C4	C3	C2	H3	179.5°	179.9°
C5	C4	C3	C2	0.4°	0.1°
C4	C5	C6	C1	0.1°	0.0°
C4	C5	C6	H1	179.9°	180.0°
C3	C2	C1	H3	180.0°	179.9°
C3	C2	C1	C6	0.2°	0.0°
C3	C2	C1	H2	179.8°	180.0°
C5	C6	C1	C2	0.1°	0.0°
C5	C6	C1	H1	180.0°	180.0°
C5	C6	C1	H2	179.9°	180.0°
C2	C1	C6	H2	180.0°	179.9°
C2	C1	C6	H1	179.9°	180.0°
C6	C1	C2	H3	179.8°	180.0°
H1	C6	C1	H2	0.1°	0.0°
H2	C1	C2	H3	0.2°	0.1°

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PDB entries from 2026-02-04

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