Z
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.49Å | |
| P | OP2 | sing | 1.62Å | 1.49Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| P | OP3 | sing | 1.62Å | 97.21Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.45Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.43Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.51Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.52Å | 1.53Å | |
| C2' | H2' | sing | 1.10Å | 1.12Å | |
| C2' | H2'' | sing | 1.09Å | 1.11Å | |
| C1' | N1 | sing | 1.43Å | 1.48Å | |
| C1' | H1' | sing | 1.10Å | 1.11Å | |
| N1 | C2 | sing | 1.42Å | 1.39Å | |
| N1 | C6 | sing | 1.39Å | 1.40Å | |
| C2 | O2 | doub | 1.23Å | 1.25Å | |
| C2 | N3 | sing | 1.39Å | 1.35Å | |
| N3 | C4 | doub | 1.29Å | 1.34Å | |
| C4 | C5 | sing | 1.47Å | 1.42Å | |
| C4 | H4 | sing | 1.10Å | 1.10Å | |
| C5 | C6 | doub | 1.33Å | 1.37Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.8° | 115.3° |
| OP1 | P | O5' | 106.3° | 115.0° |
| OP1 | P | OP3 | 84.2° | 115.0° |
| OP2 | P | O5' | 109.7° | 103.7° |
| OP2 | P | OP3 | 55.3° | 103.3° |
| P | OP2 | HOP2 | 119.9° | 118.9° |
| O5' | P | OP3 | 82.9° | 102.9° |
| P | O5' | C5' | 119.8° | 118.5° |
| P | OP3 | HOP3 | 84.2° | 118.9° |
| O5' | C5' | C4' | 110.5° | 108.9° |
| O5' | C5' | H5' | 111.9° | 109.0° |
| O5' | C5' | H5'' | 111.9° | 108.9° |
| C4' | C5' | H5' | 111.8° | 110.3° |
| C4' | C5' | H5'' | 111.8° | 110.3° |
| C5' | C4' | O4' | 111.7° | 107.9° |
| C5' | C4' | C3' | 112.8° | 112.9° |
| C5' | C4' | H4' | 104.1° | 109.5° |
| H5' | C5' | H5'' | 98.5° | 109.3° |
| O4' | C4' | C3' | 104.4° | 106.2° |
| O4' | C4' | H4' | 112.5° | 107.9° |
| C4' | O4' | C1' | 108.4° | 109.3° |
| C3' | C4' | H4' | 111.5° | 112.2° |
| C4' | C3' | O3' | 106.5° | 109.9° |
| C4' | C3' | C2' | 103.0° | 103.1° |
| C4' | C3' | H3' | 115.7° | 113.5° |
| O4' | C1' | C2' | 107.6° | 107.4° |
| O4' | C1' | N1 | 108.9° | 109.3° |
| O4' | C1' | H1' | 114.5° | 108.0° |
| O3' | C3' | C2' | 110.5° | 109.7° |
| O3' | C3' | H3' | 108.9° | 107.4° |
| C3' | O3' | HO3' | 106.5° | 107.3° |
| C2' | C3' | H3' | 112.0° | 113.2° |
| C3' | C2' | C1' | 104.2° | 102.5° |
| C3' | C2' | H2' | 114.2° | 109.7° |
| C3' | C2' | H2'' | 114.2° | 114.1° |
| C1' | C2' | H2' | 114.2° | 110.6° |
| C1' | C2' | H2'' | 114.2° | 111.7° |
| C2' | C1' | N1 | 117.8° | 112.8° |
| C2' | C1' | H1' | 104.9° | 111.5° |
| H2' | C2' | H2'' | 96.3° | 108.3° |
| N1 | C1' | H1' | 103.4° | 107.8° |
| C1' | N1 | C2 | 118.3° | 120.2° |
| C1' | N1 | C6 | 121.4° | 120.1° |
| C2 | N1 | C6 | 117.9° | 119.7° |
| N1 | C2 | O2 | 118.7° | 121.1° |
| N1 | C2 | N3 | 119.3° | 118.6° |
| N1 | C6 | C5 | 117.1° | 122.7° |
| N1 | C6 | H6 | 122.5° | 116.1° |
| O2 | C2 | N3 | 122.1° | 120.3° |
| C2 | N3 | C4 | 120.2° | 118.9° |
| N3 | C4 | C5 | 121.5° | 125.6° |
| N3 | C4 | H4 | 116.1° | 119.0° |
| C5 | C4 | H4 | 122.4° | 115.4° |
| C4 | C5 | C6 | 116.4° | 114.4° |
| C4 | C5 | H5 | 123.5° | 121.2° |
| C6 | C5 | H5 | 120.1° | 124.4° |
| C5 | C6 | H6 | 120.4° | 121.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 123.3° | 126.6° |
| OP1 | P | OP2 | OP3 | 57.4° | 126.3° |
| OP1 | P | O5' | OP3 | 81.8° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.8° |
| OP1 | P | O5' | C5' | 23.5° | 179.9° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 49.1° | 107.4° |
| OP2 | P | O5' | C5' | 154.4° | 53.2° |
| OP2 | P | OP3 | HOP3 | 47.3° | 78.5° |
| O5' | P | OP2 | HOP2 | 56.7° | 175.4° |
| P | O5' | C5' | C4' | 162.7° | 180.0° |
| P | O5' | C5' | H5' | 37.5° | 59.6° |
| P | O5' | C5' | H5'' | 72.0° | 59.6° |
| O5' | P | OP3 | HOP3 | 72.7° | 173.8° |
| OP3 | P | OP2 | HOP2 | 122.6° | 77.5° |
| OP3 | P | O5' | C5' | 105.3° | 54.2° |
| O5' | C5' | C4' | H5' | 125.3° | 119.6° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.5° |
| O5' | C5' | H5' | H5'' | 117.8° | 119.0° |
| O5' | C5' | C4' | O4' | 72.7° | 62.4° |
| O5' | C5' | C4' | C3' | 170.1° | 179.5° |
| O5' | C5' | C4' | H4' | 49.0° | 54.7° |
| C4' | C5' | H5' | H5'' | 117.7° | 121.5° |
| C5' | C4' | O4' | C3' | 122.2° | 121.4° |
| C5' | C4' | O4' | H4' | 116.7° | 118.2° |
| C5' | C4' | C3' | H4' | 116.8° | 124.3° |
| C5' | C4' | O4' | C1' | 154.9° | 108.6° |
| C5' | C4' | C3' | O3' | 87.2° | 154.2° |
| C5' | C4' | C3' | C2' | 156.5° | 88.8° |
| C5' | C4' | C3' | H3' | 34.0° | 34.0° |
| H5' | C5' | C4' | O4' | 52.6° | 57.1° |
| H5' | C5' | C4' | C3' | 64.7° | 60.0° |
| H5' | C5' | C4' | H4' | 174.3° | 174.3° |
| H5'' | C5' | C4' | O4' | 162.0° | 178.1° |
| H5'' | C5' | C4' | C3' | 44.8° | 61.0° |
| H5'' | C5' | C4' | H4' | 76.3° | 64.8° |
| O4' | C4' | C3' | H4' | 121.8° | 117.6° |
| O4' | C4' | C3' | O3' | 151.3° | 87.7° |
| O4' | C4' | C3' | C2' | 35.0° | 29.2° |
| O4' | C4' | C3' | H3' | 87.5° | 152.1° |
| C4' | O4' | C1' | C2' | 16.9° | 9.0° |
| C4' | O4' | C1' | N1 | 145.6° | 131.7° |
| C4' | O4' | C1' | H1' | 99.2° | 111.3° |
| C3' | C4' | O4' | C1' | 32.7° | 12.7° |
| C4' | C3' | O3' | C2' | 111.1° | 112.7° |
| C4' | C3' | O3' | H3' | 125.4° | 123.9° |
| C4' | C3' | C2' | H3' | 125.0° | 123.0° |
| C4' | C3' | O3' | HO3' | 180.0° | 127.5° |
| C4' | C3' | C2' | C1' | 24.5° | 33.4° |
| C4' | C3' | C2' | H2' | 149.7° | 84.1° |
| C4' | C3' | C2' | H2'' | 100.8° | 154.3° |
| H4' | C4' | O4' | C1' | 88.3° | 133.2° |
| H4' | C4' | C3' | O3' | 29.6° | 29.9° |
| H4' | C4' | C3' | C2' | 86.8° | 146.9° |
| H4' | C4' | C3' | H3' | 150.7° | 90.3° |
| O4' | C1' | C2' | C3' | 5.8° | 26.9° |
| O4' | C1' | C2' | N1 | 123.4° | 120.5° |
| O4' | C1' | C2' | H1' | 122.3° | 118.1° |
| O4' | C1' | C2' | H2' | 131.0° | 90.0° |
| O4' | C1' | C2' | H2'' | 119.6° | 149.4° |
| O4' | C1' | N1 | H1' | 122.2° | 117.1° |
| O4' | C1' | N1 | C2 | 60.0° | 147.1° |
| O4' | C1' | N1 | C6 | 102.3° | 32.9° |
| O3' | C3' | C2' | H3' | 121.6° | 119.9° |
| O3' | C3' | C2' | C1' | 137.9° | 83.6° |
| O3' | C3' | C2' | H2' | 96.9° | 158.9° |
| O3' | C3' | C2' | H2'' | 12.6° | 37.2° |
| C2' | C3' | O3' | HO3' | 68.9° | 119.8° |
| C3' | C2' | C1' | H2' | 125.3° | 116.9° |
| C3' | C2' | C1' | H2'' | 125.3° | 122.5° |
| C3' | C2' | H2' | H2'' | 120.1° | 125.1° |
| C3' | C2' | C1' | N1 | 117.7° | 147.4° |
| C3' | C2' | C1' | H1' | 128.1° | 91.2° |
| H3' | C3' | O3' | HO3' | 54.6° | 3.7° |
| H3' | C3' | C2' | C1' | 100.5° | 156.4° |
| H3' | C3' | C2' | H2' | 24.7° | 38.9° |
| H3' | C3' | C2' | H2'' | 134.2° | 82.7° |
| C1' | C2' | H2' | H2'' | 120.1° | 122.7° |
| C2' | C1' | N1 | H1' | 115.1° | 123.5° |
| C2' | C1' | N1 | C2 | 177.3° | 93.5° |
| C2' | C1' | N1 | C6 | 20.5° | 86.5° |
| H2' | C2' | C1' | N1 | 7.6° | 30.6° |
| H2' | C2' | C1' | H1' | 106.7° | 151.9° |
| H2'' | C2' | C1' | N1 | 117.0° | 90.1° |
| H2'' | C2' | C1' | H1' | 2.7° | 31.3° |
| C1' | N1 | C2 | C6 | 162.9° | 180.0° |
| C1' | N1 | C2 | O2 | 2.8° | 0.1° |
| C1' | N1 | C2 | N3 | 177.4° | 180.0° |
| C1' | N1 | C6 | C5 | 164.5° | 180.0° |
| C1' | N1 | C6 | H6 | 15.5° | 0.0° |
| H1' | C1' | N1 | C2 | 62.2° | 30.0° |
| H1' | C1' | N1 | C6 | 135.5° | 150.0° |
| N1 | C2 | O2 | N3 | 179.8° | 180.0° |
| N1 | C2 | N3 | C4 | 0.9° | 0.1° |
| C2 | N1 | C6 | C5 | 33.2° | 0.0° |
| C2 | N1 | C6 | H6 | 146.8° | 180.0° |
| C6 | N1 | C2 | O2 | 160.0° | 179.9° |
| C6 | N1 | C2 | N3 | 19.8° | 0.0° |
| N1 | C6 | C5 | C4 | 27.2° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 152.8° | 180.0° |
| O2 | C2 | N3 | C4 | 178.9° | 179.9° |
| C2 | N3 | C4 | C5 | 4.6° | 0.1° |
| C2 | N3 | C4 | H4 | 175.4° | 180.0° |
| N3 | C4 | C5 | H4 | 180.0° | 179.9° |
| N3 | C4 | C5 | C6 | 8.9° | 0.0° |
| N3 | C4 | C5 | H5 | 171.2° | 180.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 152.8° | 180.0° |
| H4 | C4 | C5 | C6 | 171.2° | 179.9° |
| H4 | C4 | C5 | H5 | 8.8° | 0.1° |
| H5 | C5 | C6 | H6 | 27.2° | 0.0° |
