English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

YZM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.35Å	1.36Å
C1	O1	doub	1.22Å	1.25Å
C1	N2	sing	1.35Å	1.39Å
N2	C2	sing	1.35Å	1.38Å
C2	O2	doub	1.22Å	1.22Å
C2	C3	sing	1.48Å	1.52Å
C3	C4	doub	1.40Å	1.46Å	Aromatic
C3	C8	sing	1.40Å	1.45Å	Aromatic
C4	C5	sing	1.38Å	1.43Å	Aromatic
C5	C6	doub	1.38Å	1.44Å	Aromatic
C6	C7	sing	1.38Å	1.45Å	Aromatic
C7	C8	doub	1.38Å	1.44Å	Aromatic
N1	H11N	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
N2	H21N	sing	0.97Å	1.00Å
C4	H41	sing	1.08Å	1.08Å
C5	H51	sing	1.08Å	1.08Å
C6	H61	sing	1.08Å	1.08Å
C7	H71	sing	1.08Å	1.08Å
C8	H81	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	O1	117.7°	119.9°
N1	C1	N2	121.6°	120.0°
C1	N1	H11N	120.0°	120.0°
C1	N1	H2	120.0°	120.0°
O1	C1	N2	120.7°	120.0°
C1	N2	C2	126.5°	120.0°
C1	N2	H21N	116.7°	120.0°
N2	C2	O2	122.5°	120.0°
N2	C2	C3	122.1°	120.0°
C2	N2	H21N	116.7°	120.0°
O2	C2	C3	115.4°	120.0°
C2	C3	C4	121.3°	120.1°
C2	C3	C8	119.7°	120.1°
C4	C3	C8	119.0°	119.7°
C3	C4	C5	120.9°	119.9°
C3	C4	H41	119.6°	120.1°
C3	C8	C7	119.9°	119.8°
C3	C8	H81	120.0°	120.1°
C4	C5	C6	119.8°	120.1°
C5	C4	H41	119.6°	120.0°
C4	C5	H51	120.1°	120.0°
C5	C6	C7	120.0°	120.3°
C6	C5	H51	120.1°	119.9°
C5	C6	H61	120.0°	119.9°
C6	C7	C8	120.3°	120.1°
C7	C6	H61	120.0°	119.8°
C6	C7	H71	119.8°	119.9°
C8	C7	H71	119.8°	119.9°
C7	C8	H81	120.0°	120.0°
H11N	N1	H2	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	O1	N2	177.7°	179.9°
N1	C1	N2	C2	1.8°	180.0°
C1	N1	H11N	H2	180.0°	179.8°
N1	C1	N2	H21N	178.2°	0.1°
O1	C1	N2	C2	179.3°	0.1°
O1	C1	N1	H11N	0.0°	0.0°
O1	C1	N1	H2	180.0°	179.7°
O1	C1	N2	H21N	0.6°	180.0°
C1	N2	C2	H21N	180.0°	179.9°
C1	N2	C2	O2	1.3°	0.1°
C1	N2	C2	C3	179.6°	180.0°
N2	C1	N1	H11N	177.7°	180.0°
N2	C1	N1	H2	2.3°	0.2°
N2	C2	O2	C3	179.2°	180.0°
N2	C2	C3	C4	179.5°	180.0°
N2	C2	C3	C8	1.1°	0.3°
O2	C2	C3	C4	0.3°	0.0°
O2	C2	C3	C8	179.7°	179.8°
O2	C2	N2	H21N	178.7°	180.0°
C2	C3	C4	C8	179.4°	179.8°
C2	C3	C4	C5	179.6°	180.0°
C2	C3	C8	C7	179.6°	179.7°
C3	C2	N2	H21N	0.4°	0.0°
C2	C3	C4	H41	0.4°	0.0°
C2	C3	C8	H81	0.5°	0.0°
C3	C4	C5	H41	180.0°	180.0°
C3	C4	C5	C6	1.1°	0.0°
C4	C3	C8	C7	1.0°	0.6°
C3	C4	C5	H51	178.9°	180.0°
C4	C3	C8	H81	178.9°	179.8°
C8	C3	C4	C5	1.0°	0.2°
C3	C8	C7	C6	1.3°	0.6°
C3	C8	C7	H81	180.0°	179.7°
C8	C3	C4	H41	179.0°	179.8°
C3	C8	C7	H71	178.7°	179.7°
C4	C5	C6	H51	180.0°	180.0°
C4	C5	C6	C7	1.4°	0.0°
C4	C5	C6	H61	178.6°	180.0°
C5	C6	C7	H61	180.0°	180.0°
C5	C6	C7	C8	1.5°	0.3°
C6	C5	C4	H41	178.8°	180.0°
C5	C6	C7	H71	178.5°	180.0°
C6	C7	C8	H71	180.0°	179.7°
C7	C6	C5	H51	178.6°	180.0°
C6	C7	C8	H81	178.7°	179.7°
C8	C7	C6	H61	178.5°	179.7°
H41	C4	C5	H51	1.1°	0.0°
H51	C5	C6	H61	1.4°	0.0°
H61	C6	C7	H71	1.5°	0.0°
H71	C7	C8	H81	1.3°	0.0°

222624

PDB entries from 2024-07-17

PDB statistics

PDBj update info

Contact PDBj

numon