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SummaryGeometryRelated PDB entries

YZK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C04N03sing1.34Å1.32ÅAromatic
C04C05doub1.35Å1.39ÅAromatic
N03C02doub1.31Å1.33ÅAromatic
C05N06sing1.37Å1.33ÅAromatic
C02N06sing1.36Å1.33ÅAromatic
C02C01sing1.51Å1.53Å
N06C07sing1.40Å1.33Å
C08C07doub1.39Å1.39ÅAromatic
C08C09sing1.39Å1.38ÅAromatic
C07C12sing1.39Å1.38ÅAromatic
C09C10doub1.38Å1.39ÅAromatic
C12N11doub1.32Å1.32ÅAromatic
C10N11sing1.32Å1.31ÅAromatic
C10H1sing1.08Å1.08Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C04H5sing1.08Å1.08Å
C05H6sing1.08Å1.08Å
C08H7sing1.08Å1.08Å
C09H8sing1.08Å1.08Å
C12H9sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N03C04C05106.3°108.2°
C04N03C02109.4°109.3°
N03C04H5126.9°125.9°
C04C05N06107.8°106.9°
C05C04H5126.9°125.9°
C04C05H6126.1°126.5°
N03C02N06108.7°108.6°
N03C02C01123.9°125.7°
C05N06C02107.9°107.0°
C05N06C07123.7°126.5°
N06C05H6126.1°126.6°
N06C02C01127.4°125.7°
C02N06C07128.3°126.4°
C02C01H2109.5°109.5°
C02C01H3109.5°109.4°
C02C01H4109.5°109.5°
N06C07C08120.9°120.5°
N06C07C12121.0°120.5°
C07C08C09119.5°118.4°
C08C07C12117.9°119.0°
C07C08H7120.2°120.8°
C08C09C10118.9°119.2°
C09C08H7120.3°120.8°
C08C09H8120.6°120.4°
C07C12N11121.4°120.7°
C07C12H9119.3°119.6°
C09C10N11120.3°120.9°
C09C10H1119.9°119.6°
C10C09H8120.6°120.3°
C12N11C10122.0°121.8°
N11C12H9119.3°119.7°
N11C10H1119.8°119.5°
H2C01H3109.5°109.4°
H2C01H4109.4°109.5°
H3C01H4109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N03C04C05H5180.0°180.0°
N03C04C05N060.3°0.0°
C04N03C02N060.8°0.0°
C04N03C02C01179.3°179.7°
N03C04C05H6179.7°180.0°
C05C04N03C020.3°0.0°
C04C05N06H6180.0°180.0°
C04C05N06C020.7°0.0°
C04C05N06C07177.2°179.7°
N03C02N06C050.9°0.0°
N03C02N06C01178.4°179.8°
N03C02N06C07177.2°179.7°
N03C02C01H20.0°89.7°
N03C02C01H3120.0°30.3°
N03C02C01H4120.0°150.3°
C02N03C04H5179.7°180.0°
C05N06C02C07176.2°179.7°
C05N06C02C01179.4°179.7°
C05N06C07C08108.2°50.8°
C05N06C07C1265.6°129.6°
N06C05C04H5179.8°180.0°
C02N06C07C0867.5°129.5°
C02N06C07C12118.7°50.0°
N06C02C01H2178.2°90.0°
N06C02C01H361.8°150.0°
N06C02C01H458.2°30.0°
C02N06C05H6179.3°180.0°
C01C02N06C074.4°0.1°
C02C01H2H3120.0°119.9°
C02C01H2H4120.0°120.0°
C02C01H3H4120.0°120.0°
N06C07C08C12173.9°179.6°
N06C07C08C09177.7°179.7°
N06C07C12N11176.5°180.0°
C07N06C05H62.8°0.3°
N06C07C08H72.3°0.1°
N06C07C12H93.5°0.4°
C07C08C09H7180.0°179.8°
C07C08C09C103.1°0.5°
C08C07C12N112.6°0.4°
C07C08C09H8176.9°179.5°
C08C07C12H9177.4°180.0°
C09C08C07C123.8°0.7°
C08C09C10H8180.0°179.9°
C08C09C10N111.1°0.0°
C08C09C10H1178.9°179.8°
C07C12N11H9180.0°179.6°
C07C12N11C100.6°0.1°
C12C07C08H7176.2°179.5°
C09C10N11C120.2°0.3°
C09C10N11H1180.0°179.8°
C10C09C08H7176.9°179.7°
C12N11C10H1179.8°180.0°
N11C10C09H8178.9°179.9°
C10N11C12H9179.4°179.5°
H1C10C09H81.1°0.3°
H2C01H3H4120.0°120.0°
H5C04C05H60.3°0.1°
H7C08C09H83.1°0.3°

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PDB entries from 2026-01-14

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