Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YZ9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C3C11sing1.53Å1.55Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.12Å
C3H33sing1.09Å1.11Å
C11O2sing1.45Å1.49Å
C11H111sing1.09Å1.12Å
C11H112sing1.09Å1.11Å
O1C12doub1.22Å1.21Å
O2C12sing1.35Å1.32Å
C6C2doub1.40Å1.41ÅAromatic
C6C10sing1.36Å1.41ÅAromatic
C6H6sing1.08Å1.10Å
C5C2sing1.41Å1.45ÅAromatic
C5C9doub1.39Å1.36ÅAromatic
C5H5sing1.08Å1.10Å
C4C1doub1.38Å1.42ÅAromatic
C4C8sing1.39Å1.42ÅAromatic
C4H4sing1.08Å1.10Å
O3C1sing1.36Å1.40ÅAromatic
O3C7sing1.36Å1.33ÅAromatic
C2C1sing1.41Å1.45ÅAromatic
C7O5doub1.22Å1.18Å
C7C9sing1.47Å1.53ÅAromatic
C12C9sing1.47Å1.50Å
O4C8sing1.36Å1.34Å
O4HO4sing0.97Å0.95Å
C10C8doub1.39Å1.43ÅAromatic
C10H10sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C11C3H31116.4°109.5°
C11C3H32109.7°109.5°
C11C3H33109.7°109.5°
C3C11O2116.4°109.5°
C3C11H111109.7°109.4°
C3C11H112109.7°109.5°
H31C3H32109.7°109.5°
H31C3H33109.7°109.4°
H32C3H33100.5°109.5°
O2C11H111109.7°109.4°
O2C11H112109.7°109.5°
C11O2C12112.0°120.1°
H111C11H112100.5°109.5°
O1C12O2120.7°119.9°
O1C12C9120.2°120.0°
O2C12C9119.1°120.0°
C2C6C10117.6°119.9°
C2C6H6121.2°120.1°
C6C2C5119.7°120.5°
C6C2C1122.7°119.6°
C10C6H6121.2°120.0°
C6C10C8118.5°120.5°
C6C10H10119.9°119.7°
C2C5C9120.3°118.4°
C2C5H5123.1°120.8°
C5C2C1117.5°119.8°
C9C5H5116.6°120.8°
C5C9C7119.4°117.6°
C5C9C12119.2°121.2°
C1C4C8113.3°119.8°
C1C4H4123.5°120.1°
C4C1O3118.0°120.6°
C4C1C2121.2°119.7°
C8C4H4123.3°120.1°
C4C8O4115.9°119.8°
C4C8C10126.7°120.5°
C1O3C7122.2°117.9°
O3C1C2120.8°119.7°
O3C7O5118.0°121.4°
O3C7C9119.0°117.2°
O5C7C9123.0°121.4°
C7C9C12121.5°121.2°
C8O4HO4115.9°106.8°
O4C8C10117.4°119.8°
C8C10H10121.6°119.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C11C3H31H32125.2°120.1°
C11C3H31H33125.3°120.0°
C11C3H32H33115.5°120.0°
C3C11O2H111125.2°119.9°
C3C11O2H112125.3°120.1°
C3C11H111H112115.5°120.0°
C3C11O2C1246.5°179.9°
H31C3H32H33115.5°119.9°
H31C3C11O2180.0°180.0°
H31C3C11H11154.8°60.1°
H31C3C11H11254.7°59.9°
H32C3C11O254.8°60.0°
H32C3C11H11170.5°59.9°
H32C3C11H112179.9°180.0°
H33C3C11O254.7°60.0°
H33C3C11H111180.0°179.9°
H33C3C11H11270.6°60.0°
O2C11H111H112115.5°120.0°
C11O2C12O13.1°0.1°
C11O2C12C9177.1°180.0°
H111C11O2C1278.8°60.0°
H112C11O2C12171.8°60.0°
O1C12O2C9179.8°180.0°
O1C12C9C520.8°0.0°
O1C12C9C7158.6°179.7°
O2C12C9C5159.0°180.0°
O2C12C9C721.6°0.2°
C2C6C10H6180.0°180.0°
C6C2C5C1179.3°179.2°
C6C2C5C9171.3°171.6°
C6C2C5H58.6°8.4°
C6C2C1C40.3°2.4°
C6C2C1O3179.3°176.6°
C2C6C10C80.4°0.6°
C2C6C10H10179.5°179.4°
C10C6C2C5178.6°178.7°
C6C10C8C40.1°0.5°
C10C6C2C10.6°2.1°
C6C10C8O4180.0°179.3°
C6C10C8H10180.0°180.0°
H6C6C2C51.3°1.3°
H6C6C2C1179.4°177.9°
H6C6C10C8179.6°179.4°
H6C6C10H100.4°0.6°
C2C5C9H5180.0°180.0°
C5C2C1C4178.9°178.3°
C5C2C1O30.1°2.6°
C2C5C9C79.6°1.7°
C2C5C9C12170.9°178.5°
C5C9C7O33.4°24.7°
C9C5C2C18.0°9.1°
C5C9C7O5176.8°155.6°
C5C9C7C12179.4°179.7°
H5C5C2C1172.1°170.9°
H5C5C9C7170.4°178.3°
H5C5C9C129.1°1.5°
C1C4C8H4180.0°180.0°
C4C1O3C2179.0°179.0°
C4C1O3C7172.6°154.7°
C1C4C8O4179.7°179.7°
C1C4C8C100.4°0.2°
C8C4C1O3178.8°177.7°
C8C4C1C20.2°1.3°
C4C8O4C10179.9°179.9°
C4C8O4HO4180.0°89.9°
C4C8C10H10179.9°179.5°
H4C4C1O31.2°2.2°
H4C4C1C2179.8°178.8°
H4C4C8O40.3°0.4°
H4C4C8C10179.6°179.8°
C1O3C7O5175.1°143.2°
C1O3C7C94.7°37.1°
C7O3C1C26.4°26.3°
O3C7O5C9179.8°179.7°
O3C7C9C12177.2°155.5°
O5C7C9C122.6°24.1°
O4C8C10H100.1°0.7°
HO4O4C8C100.2°90.0°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon