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YYG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.48Å
POP2sing1.61Å1.50Å
POP3sing1.61Å1.61Å
PO5'sing1.61Å1.60Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.46Å
C5'C4'sing1.53Å1.51Å
C5'H5'sing1.09Å1.11Å
C5'H5''sing1.09Å1.12Å
C4'O4'sing1.44Å1.42Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.43Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.54Å1.53Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.43Å
C1'H1'sing1.09Å1.11Å
N9C8sing1.37Å1.39ÅAromatic
N9C4sing1.36Å1.36ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.36ÅAromatic
C5C6sing1.42Å1.43Å
C5C4doub1.39Å1.37ÅAromatic
C6O6doub1.22Å1.25Å
C6N1sing1.35Å1.34Å
N1C2sing1.37Å1.34ÅAromatic
N1C12sing1.38Å1.30ÅAromatic
C2N2doub1.32Å1.47ÅAromatic
C2N3sing1.38Å1.34Å
N2C11sing1.34Å1.32ÅAromatic
N3C3sing1.47Å1.37Å
N3C4sing1.37Å1.35Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.11Å
C3H33sing1.09Å1.11Å
C10C11sing1.51Å1.50Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.11Å
C10H103sing1.09Å1.11Å
C11C12doub1.34Å1.38ÅAromatic
C12C13sing1.51Å1.51Å
C13C14sing1.53Å1.51Å
C13H131sing1.09Å1.11Å
C13H132sing1.09Å1.12Å
C14C15sing1.53Å1.49Å
C14H141sing1.09Å1.12Å
C14H142sing1.09Å1.12Å
C15C16sing1.51Å1.50Å
C15N20sing1.46Å1.48Å
C15H15sing1.09Å1.11Å
C16O17doub1.21Å1.24Å
C16O18sing1.34Å1.44Å
O18C19sing1.45Å1.43Å
C19H191sing1.09Å1.11Å
C19H192sing1.09Å1.11Å
C19H193sing1.09Å1.11Å
N20C21sing1.35Å1.32Å
N20HN20sing0.97Å1.02Å
C21O22doub1.21Å1.23Å
C21O23sing1.35Å1.43Å
O23C24sing1.45Å1.43Å
C24H241sing1.09Å1.12Å
C24H242sing1.09Å1.11Å
C24H243sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2114.1°109.4°
OP1POP3102.8°109.5°
OP1PO5'116.9°109.5°
OP2POP3110.1°109.4°
OP2PO5'110.4°109.5°
POP2HOP2114.1°106.8°
OP3PO5'101.2°109.5°
POP3HOP3102.8°106.9°
PO5'C5'114.1°106.8°
O5'C5'C4'105.3°109.5°
O5'C5'H5'113.8°109.4°
O5'C5'H5''113.7°109.5°
C4'C5'H5'113.8°109.4°
C4'C5'H5''113.8°109.5°
C5'C4'O4'109.7°110.3°
C5'C4'C3'115.8°110.5°
C5'C4'H4'103.4°110.4°
H5'C5'H5''96.7°109.4°
O4'C4'C3'104.4°104.8°
O4'C4'H4'115.0°110.5°
C4'O4'C1'110.6°105.3°
C3'C4'H4'108.8°110.4°
C4'C3'O3'115.3°110.5°
C4'C3'C2'101.8°104.1°
C4'C3'H3'111.8°110.5°
O4'C1'C2'106.7°104.9°
O4'C1'N9111.2°110.4°
O4'C1'H1'110.1°110.4°
O3'C3'C2'112.3°110.5°
O3'C3'H3'101.3°110.4°
C3'O3'HO3'115.3°106.8°
C2'C3'H3'114.9°110.6°
C3'C2'O2'107.1°110.5°
C3'C2'C1'102.0°104.0°
C3'C2'H2'116.1°110.5°
O2'C2'C1'110.8°110.8°
O2'C2'H2'108.0°110.5°
C2'O2'HO2'107.1°106.8°
C1'C2'H2'112.7°110.4°
C2'C1'N9109.3°110.4°
C2'C1'H1'112.0°110.3°
N9C1'H1'107.5°110.3°
C1'N9C8125.6°126.2°
C1'N9C4129.1°126.3°
C8N9C4105.4°107.5°
N9C8N7112.9°109.6°
N9C8H8125.7°125.2°
N9C4C5106.1°106.5°
N9C4N3125.9°133.9°
N7C8H8121.4°125.2°
C8N7C5103.2°109.2°
N7C5C6131.0°133.6°
N7C5C4112.4°107.2°
C6C5C4116.5°119.2°
C5C6O6123.8°120.2°
C5C6N1117.2°119.7°
C5C4N3128.1°119.6°
O6C6N1119.0°120.1°
C6N1C2119.2°120.9°
C6N1C12127.1°132.0°
C2N1C12113.7°107.1°
N1C2N2104.9°108.1°
N1C2N3129.3°120.5°
N1C12C11104.9°106.9°
N1C12C13127.7°126.6°
N2C2N3125.8°131.4°
C2N2C11103.5°109.4°
C2N3C3122.1°120.0°
C2N3C4109.7°120.1°
N2C11C10123.9°125.8°
N2C11C12112.9°108.5°
C3N3C4128.1°120.0°
N3C3H31122.1°109.5°
N3C3H32107.7°109.5°
N3C3H33107.7°109.5°
H31C3H32107.7°109.5°
H31C3H33107.8°109.5°
H32C3H33102.2°109.5°
C11C10H101123.8°109.5°
C11C10H102107.1°109.5°
C11C10H103107.1°109.5°
C10C11C12123.3°125.7°
H101C10H102107.1°109.5°
H101C10H103107.1°109.4°
H102C10H103102.6°109.5°
C11C12C13127.3°126.5°
C12C13C14107.2°109.5°
C12C13H131113.1°109.4°
C12C13H132113.1°109.5°
C14C13H131113.0°109.5°
C14C13H132113.0°109.5°
C13C14C15111.7°109.5°
C13C14H141111.4°109.4°
C13C14H142111.4°109.5°
H131C13H13297.4°109.4°
C15C14H141111.4°109.4°
C15C14H142111.4°109.5°
C14C15C16111.2°109.5°
C14C15N20108.3°109.5°
C14C15H15108.2°109.5°
H141C14H14299.0°109.5°
C16C15N20106.5°109.4°
C16C15H15109.9°109.4°
C15C16O17121.2°120.0°
C15C16O18119.7°120.0°
N20C15H15112.7°109.5°
C15N20C21118.7°120.0°
C15N20HN20126.5°120.0°
O17C16O18119.1°120.0°
C16O18C19108.7°120.0°
O18C19H191108.7°109.5°
O18C19H192112.4°109.5°
O18C19H193112.5°109.4°
H191C19H192112.6°109.5°
H191C19H193112.6°109.5°
H192C19H19398.0°109.4°
C21N20HN20114.9°120.0°
N20C21O22121.7°120.0°
N20C21O23119.5°120.0°
O22C21O23118.8°120.0°
C21O23C24109.8°120.0°
O23C24H241109.8°109.5°
O23C24H242112.1°109.5°
O23C24H243112.1°109.5°
H241C24H242112.0°109.5°
H241C24H243112.1°109.4°
H242C24H24398.3°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3115.0°120.0°
OP1POP2O5'134.1°120.0°
OP1POP3O5'121.2°120.1°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3180.0°180.0°
OP1PO5'C5'150.5°60.0°
OP2POP3O5'116.8°120.0°
OP2POP3HOP358.0°60.0°
OP2PO5'C5'76.9°180.0°
OP3POP2HOP265.0°60.1°
OP3PO5'C5'39.7°60.1°
O5'POP2HOP246.0°180.0°
O5'POP3HOP358.8°59.9°
PO5'C5'C4'178.5°180.0°
PO5'C5'H5'56.2°60.0°
PO5'C5'H5''53.3°59.9°
O5'C5'C4'H5'125.3°119.9°
O5'C5'C4'H5''125.2°120.1°
O5'C5'H5'H5''119.7°120.0°
O5'C5'C4'O4'98.2°61.6°
O5'C5'C4'C3'19.7°176.9°
O5'C5'C4'H4'138.6°60.8°
C4'C5'H5'H5''119.7°120.0°
C5'C4'O4'C3'124.7°118.9°
C5'C4'O4'H4'116.1°122.3°
C5'C4'C3'H4'116.0°122.3°
C5'C4'O4'C1'147.1°159.4°
C5'C4'C3'O3'81.1°98.4°
C5'C4'C3'C2'157.0°142.9°
C5'C4'C3'H3'33.9°24.1°
H5'C5'C4'O4'136.5°178.5°
H5'C5'C4'C3'105.6°63.1°
H5'C5'C4'H4'13.4°59.2°
H5''C5'C4'O4'27.0°58.5°
H5''C5'C4'C3'144.9°56.8°
H5''C5'C4'H4'96.1°179.1°
O4'C4'C3'H4'123.3°118.9°
O4'C4'C3'O3'158.1°142.8°
O4'C4'C3'C2'36.3°24.1°
O4'C4'C3'H3'86.9°94.7°
C4'O4'C1'C2'0.8°40.5°
C4'O4'C1'N9118.3°159.4°
C4'O4'C1'H1'122.6°78.4°
C3'C4'O4'C1'22.4°40.5°
C4'C3'O3'C2'116.1°114.7°
C4'C3'O3'H3'120.9°122.6°
C4'C3'C2'H3'121.0°118.7°
C4'C3'O3'HO3'180.0°180.0°
C4'C3'C2'O2'80.8°118.7°
C4'C3'C2'C1'35.6°0.1°
C4'C3'C2'H2'158.5°118.6°
H4'C4'O4'C1'96.8°78.3°
H4'C4'C3'O3'34.8°23.9°
H4'C4'C3'C2'87.0°94.8°
H4'C4'C3'H3'149.9°146.4°
O4'C1'C2'C3'23.5°23.9°
O4'C1'C2'O2'90.2°142.6°
O4'C1'C2'N9120.3°118.9°
O4'C1'C2'H1'120.6°118.9°
O4'C1'C2'H2'148.6°94.7°
O4'C1'N9H1'120.6°122.3°
O4'C1'N9C818.9°27.0°
O4'C1'N9C4161.4°153.0°
O3'C3'C2'H3'115.1°122.6°
O3'C3'C2'O2'43.1°0.1°
O3'C3'C2'C1'159.5°118.8°
O3'C3'C2'H2'77.6°122.7°
C2'C3'O3'HO3'64.0°65.3°
C3'C2'O2'C1'110.4°114.7°
C3'C2'O2'H2'125.7°122.7°
C3'C2'C1'H2'125.1°118.6°
C3'C2'O2'HO2'180.0°61.5°
C3'C2'C1'N996.8°142.8°
C3'C2'C1'H1'144.1°95.0°
H3'C3'O3'HO3'59.1°57.4°
H3'C3'C2'O2'158.2°122.5°
H3'C3'C2'C1'85.4°118.6°
H3'C3'C2'H2'37.4°0.1°
O2'C2'C1'H2'121.2°122.7°
O2'C2'C1'N9149.5°98.5°
O2'C2'C1'H1'30.4°23.7°
C1'C2'O2'HO2'69.6°176.2°
C2'C1'N9H1'121.8°122.2°
C2'C1'N9C898.7°88.5°
C2'C1'N9C481.1°91.5°
H2'C2'O2'HO2'54.3°61.1°
H2'C2'C1'N928.3°24.2°
H2'C2'C1'H1'90.8°146.4°
C1'N9C8C4179.8°180.0°
C1'N9C8N7179.8°180.0°
C1'N9C8H80.2°0.1°
C1'N9C4C5179.9°180.0°
C1'N9C4N30.6°0.1°
H1'C1'N9C8139.5°149.3°
H1'C1'N9C440.7°30.7°
N9C8N7H8180.0°179.9°
N9C8N7C50.1°0.0°
C8N9C4C50.1°0.0°
C8N9C4N3179.6°180.0°
C4N9C8N70.0°0.0°
C4N9C8H8180.0°180.0°
N9C4C5N70.2°0.0°
N9C4C5C6179.7°180.0°
N9C4C5N3179.5°180.0°
N9C4N3C2179.6°180.0°
N9C4N3C30.4°0.1°
C8N7C5C6179.7°180.0°
C8N7C5C40.2°0.0°
H8C8N7C5179.9°180.0°
N7C5C6C4179.9°179.9°
N7C5C6O60.8°0.1°
N7C5C6N1179.7°179.9°
N7C5C4N3179.7°179.9°
C5C6O6N1178.9°180.0°
C5C6N1C20.9°0.1°
C5C6N1C12179.9°180.0°
C6C5C4N30.2°0.0°
C4C5C6O6179.3°179.9°
C4C5C6N10.4°0.0°
C5C4N3C20.3°0.1°
C5C4N3C3179.8°180.0°
O6C6N1C2179.9°179.9°
O6C6N1C121.0°0.0°
C6N1C2C12179.3°179.9°
C6N1C2N2179.3°179.9°
C6N1C2N30.9°0.1°
C6N1C12C11179.1°179.7°
C6N1C12C130.2°0.0°
N1C2N2N3179.8°179.9°
N1C2N2C110.1°0.3°
N1C2N3C3179.6°180.0°
N1C2N3C40.3°0.1°
C2N1C12C110.1°0.3°
C2N1C12C13179.0°179.9°
C12N1C2N20.0°0.0°
C12N1C2N3179.8°180.0°
N1C12C11N20.2°0.4°
N1C12C11C10179.8°180.0°
N1C12C11C13178.9°179.7°
N1C12C13C1476.2°90.0°
N1C12C13H13149.1°30.0°
N1C12C13H132158.6°149.9°
N2C2N3C30.1°0.0°
N2C2N3C4179.9°180.0°
C2N2C11C10179.8°180.0°
C2N2C11C120.2°0.5°
N3C2N2C11179.9°179.8°
C2N3C3C4179.9°179.9°
C2N3C3H31179.9°0.1°
C2N3C3H3254.8°120.1°
C2N3C3H3354.7°119.9°
N2C11C10C12179.5°179.5°
N2C11C10H101180.0°90.0°
N2C11C10H10254.8°150.0°
N2C11C10H10354.8°30.0°
N2C11C12C13179.1°179.9°
N3C3H31H32125.2°120.0°
N3C3H31H33125.3°120.0°
N3C3H32H33113.3°120.0°
C4N3C3H310.1°180.0°
C4N3C3H32125.3°60.0°
C4N3C3H33125.2°60.0°
H31C3H32H33113.4°120.0°
C11C10H101H102125.2°120.0°
C11C10H101H103125.2°120.0°
C11C10H102H103112.6°120.0°
C10C11C12C131.3°0.3°
H101C10H102H103112.6°120.0°
H101C10C11C120.5°90.5°
H102C10C11C12124.8°29.5°
H103C10C11C12125.7°149.5°
C11C12C13C14102.5°90.4°
C11C12C13H131132.3°149.6°
C11C12C13H13222.8°29.7°
C12C13C14H131125.3°119.9°
C12C13C14H132125.3°120.1°
C12C13H131H132119.0°120.0°
C12C13C14C15124.4°180.0°
C12C13C14H1410.9°60.1°
C12C13C14H142110.3°59.9°
C14C13H131H132118.9°120.0°
C13C14C15H141125.3°119.9°
C13C14C15H142125.3°120.1°
C13C14H141H142117.3°120.0°
C13C14C15C16118.2°180.0°
C13C14C15N20125.0°60.0°
C13C14C15H152.6°60.1°
H131C13C14C15110.3°60.1°
H131C13C14H141124.4°180.0°
H131C13C14H14215.0°60.0°
H132C13C14C150.9°59.9°
H132C13C14H141126.2°60.0°
H132C13C14H142124.4°180.0°
C15C14H141H142117.3°120.1°
C14C15C16N20117.9°120.1°
C14C15C16H15119.8°120.0°
C14C15N20H15119.6°120.1°
C14C15C16O1718.1°89.9°
C14C15C16O18161.9°90.0°
C14C15N20C2154.5°150.0°
C14C15N20HN20125.5°30.0°
H141C14C15C167.1°60.1°
H141C14C15N20109.7°59.9°
H141C14C15H15127.9°180.0°
H142C14C15C16116.5°60.0°
H142C14C15N200.2°179.9°
H142C14C15H15122.7°60.0°
C16C15N20H15120.6°119.9°
C15C16O17O18180.0°180.0°
C15C16O18C19107.4°180.0°
C16C15N20C2165.2°90.0°
C16C15N20HN20114.8°90.0°
N20C15C16O1799.7°150.0°
N20C15C16O1880.3°30.0°
C15N20C21HN20180.0°180.0°
C15N20C21O2214.3°0.1°
C15N20C21O23166.1°180.0°
H15C15C16O17137.9°30.1°
H15C15C16O1842.1°150.0°
H15C15N20C21174.1°29.9°
H15C15N20HN205.8°150.1°
O17C16O18C1972.6°0.0°
C16O18C19H191180.0°180.0°
C16O18C19H19254.7°60.0°
C16O18C19H19354.7°60.0°
O18C19H191H192125.2°120.1°
O18C19H191H193125.2°119.9°
O18C19H192H193118.4°120.0°
H191C19H192H193118.5°120.0°
N20C21O22O23179.6°180.0°
N20C21O23C24115.1°180.0°
HN20N20C21O22165.7°180.0°
HN20N20C21O2313.8°0.0°
O22C21O23C2464.5°0.0°
C21O23C24H241180.0°180.0°
C21O23C24H24254.8°60.0°
C21O23C24H24354.7°60.0°
O23C24H241H242125.3°120.0°
O23C24H241H243125.3°120.0°
O23C24H242H243118.1°120.0°
H241C24H242H243118.0°120.0°

260320

PDB entries from 2026-09-30

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