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YY5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OAHCAIsing1.43Å1.42Å
OAHCAEsing1.36Å1.35Å
CAECAFdoub1.39Å1.38ÅAromatic
CAECADsing1.39Å1.37ÅAromatic
CLLCADsing1.74Å1.69Å
CAFCAAsing1.39Å1.38ÅAromatic
CADCACdoub1.39Å1.36ÅAromatic
OBHCBGdoub1.22Å1.23Å
CAAOAGsing1.36Å1.35Å
CAACABdoub1.39Å1.39ÅAromatic
OAWCARdoub1.22Å1.23Å
CAJOAGsing1.43Å1.42Å
CACCABsing1.39Å1.39ÅAromatic
CACNAMsing1.40Å1.47Å
CBFNBEsing1.47Å1.51Å
CBFCBBsing1.55Å1.53Å
CBGNBEsing1.35Å1.37Å
CBGCBIsing1.47Å1.55Å
CABCLKsing1.74Å1.65Å
NAMCARsing1.35Å1.35Å
NAMCANsing1.47Å1.46Å
NBECBDsing1.47Å1.50Å
CARNAQsing1.34Å1.36Å
CBJCBIdoub1.33Å1.55Å
CBJCBKsing1.51Å1.55Å
CBBNAQsing1.46Å1.52Å
CBBCBCsing1.55Å1.49Å
CBKNBLsing1.47Å1.51Å
NAQC4sing1.38Å1.38Å
CBDCBCsing1.54Å1.46Å
CANC5sing1.51Å1.40Å
C4C5doub1.40Å1.40ÅAromatic
C4N3sing1.33Å1.33ÅAromatic
NBLCBMsing1.47Å1.49Å
NBLCBNsing1.47Å1.49Å
C5C6sing1.37Å1.38ÅAromatic
CBACAYsing1.53Å1.53Å
N3C2doub1.33Å1.35ÅAromatic
C6N1doub1.33Å1.36ÅAromatic
C2N1sing1.32Å1.35ÅAromatic
C2NAXsing1.38Å1.43Å
CAYNAXsing1.46Å1.47Å
CAYCAZsing1.53Å1.56Å
CAIH1sing1.09Å1.10Å
CAIH2sing1.09Å1.10Å
CAIH3sing1.09Å1.10Å
CAFH4sing1.08Å1.08Å
CAJH5sing1.09Å1.10Å
CAJH6sing1.09Å1.10Å
CAJH7sing1.09Å1.10Å
CANH8sing1.09Å1.10Å
CANH9sing1.09Å1.10Å
C6H10sing1.08Å1.08Å
NAXH11sing0.97Å1.00Å
CAYH12sing1.09Å1.10Å
CBAH13sing1.09Å1.10Å
CBAH14sing1.09Å1.10Å
CBAH15sing1.09Å1.10Å
CAZH16sing1.09Å1.10Å
CAZH17sing1.09Å1.10Å
CAZH18sing1.09Å1.10Å
CBBH19sing1.09Å1.10Å
CBFH20sing1.09Å1.10Å
CBFH21sing1.09Å1.10Å
CBCH22sing1.09Å1.10Å
CBCH23sing1.09Å1.10Å
CBDH24sing1.09Å1.10Å
CBDH25sing1.09Å1.10Å
CBIH26sing1.08Å1.08Å
CBJH27sing1.08Å1.08Å
CBKH28sing1.09Å1.10Å
CBKH29sing1.09Å1.10Å
CBNH31sing1.09Å1.10Å
CBNH32sing1.09Å1.10Å
CBNH33sing1.09Å1.10Å
CBMH34sing1.09Å1.10Å
CBMH35sing1.09Å1.10Å
CBMH36sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAIOAHCAE111.7°117.0°
OAHCAIH1109.5°109.5°
OAHCAIH2109.4°109.5°
OAHCAIH3109.5°109.5°
OAHCAECAF122.9°120.0°
OAHCAECAD116.5°120.0°
CAFCAECAD120.6°120.0°
CAECAFCAA118.3°120.1°
CAECAFH4120.8°120.0°
CAECADCLL125.8°120.0°
CAECADCAC121.2°120.0°
CLLCADCAC112.9°120.0°
CAFCAAOAG124.0°120.0°
CAFCAACAB121.4°120.0°
CAACAFH4120.8°119.9°
CADCACCAB119.9°120.0°
CADCACNAM118.5°120.0°
OBHCBGNBE122.7°120.0°
OBHCBGCBI119.2°120.0°
OAGCAACAB114.6°120.0°
CAAOAGCAJ116.4°117.0°
CAACABCAC118.6°120.0°
CAACABCLK116.4°120.0°
OAWCARNAM118.8°118.4°
OAWCARNAQ119.9°118.4°
OAGCAJH5109.5°109.5°
OAGCAJH6109.5°109.5°
OAGCAJH7109.4°109.5°
CABCACNAM121.6°120.0°
CACCABCLK125.0°120.0°
CACNAMCAR118.7°120.5°
CACNAMCAN110.9°120.4°
NBECBFCBB102.3°104.8°
CBFNBECBG128.1°125.6°
CBFNBECBD107.5°108.7°
NBECBFH20111.2°110.3°
NBECBFH21111.2°110.4°
CBFCBBNAQ118.8°111.0°
CBFCBBCBC104.6°101.5°
CBFCBBH19108.8°111.1°
CBBCBFH20111.2°110.4°
CBBCBFH21111.2°110.3°
NBECBGCBI118.1°120.0°
CBGNBECBD124.3°125.6°
CBGCBICBJ122.7°120.0°
CBGCBIH26118.6°120.0°
CARNAMCAN117.9°119.1°
NAMCARNAQ121.3°123.2°
NAMCANC5108.1°116.6°
NAMCANH8109.8°108.0°
NAMCANH9109.8°108.0°
NBECBDCBC103.8°107.3°
NBECBDH24110.9°109.9°
NBECBDH25110.9°110.0°
CARNAQCBB114.9°118.5°
CARNAQC4116.1°123.0°
CBICBJCBK120.8°120.0°
CBJCBIH26118.6°120.0°
CBICBJH27119.6°120.0°
CBJCBKNBL107.4°109.5°
CBKCBJH27119.6°120.0°
CBJCBKH28110.0°109.5°
CBJCBKH29110.0°109.5°
NAQCBBCBC106.2°111.0°
CBBNAQC4120.2°118.5°
NAQCBBH19108.9°110.9°
CBBCBCCBD101.3°103.0°
CBCCBBH19109.2°111.0°
CBBCBCH22111.5°110.7°
CBBCBCH23111.4°110.7°
CBKNBLCBM112.8°111.0°
CBKNBLCBN114.6°111.0°
NBLCBKH28110.0°109.4°
NBLCBKH29110.0°109.4°
NAQC4C5119.9°119.9°
NAQC4N3122.4°121.5°
CBDCBCH22111.5°110.7°
CBDCBCH23111.5°110.9°
CBCCBDH24110.9°109.9°
CBCCBDH25110.9°109.8°
CANC5C4121.6°118.2°
CANC5C6117.7°122.2°
C5CANH8109.8°108.1°
C5CANH9109.8°108.0°
C5C4N3117.6°118.6°
C4C5C6120.6°119.6°
C4N3C2121.7°120.3°
CBMNBLCBN110.1°110.9°
NBLCBMH34109.5°109.4°
NBLCBMH35109.5°109.5°
NBLCBMH36109.5°109.5°
NBLCBNH31109.5°109.5°
NBLCBNH32109.4°109.5°
NBLCBNH33109.5°109.5°
C5C6N1118.9°118.6°
C5C6H10120.5°120.7°
CBACAYNAX108.1°109.5°
CBACAYCAZ109.4°109.5°
CBACAYH12110.3°109.5°
CAYCBAH13109.5°109.5°
CAYCBAH14109.5°109.5°
CAYCBAH15109.5°109.5°
N3C2N1121.5°122.1°
N3C2NAX121.6°118.9°
C6N1C2119.5°120.9°
N1C6H10120.6°120.7°
N1C2NAX116.9°119.0°
C2NAXCAY113.6°120.0°
C2NAXH11108.4°120.0°
NAXCAYCAZ107.9°109.5°
CAYNAXH11108.4°120.0°
NAXCAYH12111.3°109.5°
CAZCAYH12109.9°109.4°
CAYCAZH16109.5°109.5°
CAYCAZH17109.5°109.5°
CAYCAZH18109.5°109.5°
H1CAIH2109.5°109.4°
H1CAIH3109.5°109.5°
H2CAIH3109.5°109.5°
H5CAJH6109.5°109.5°
H5CAJH7109.5°109.4°
H6CAJH7109.4°109.5°
H8CANH9109.5°107.8°
H13CBAH14109.4°109.4°
H13CBAH15109.4°109.4°
H14CBAH15109.5°109.5°
H16CAZH17109.5°109.5°
H16CAZH18109.5°109.5°
H17CAZH18109.5°109.4°
H20CBFH21109.5°110.5°
H22CBCH23109.5°110.6°
H24CBDH25109.5°109.9°
H28CBKH29109.5°109.5°
H31CBNH32109.5°109.5°
H31CBNH33109.5°109.5°
H32CBNH33109.5°109.4°
H34CBMH35109.5°109.5°
H34CBMH36109.4°109.5°
H35CBMH36109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAIOAHCAECAF85.7°0.1°
CAIOAHCAECAD95.3°179.8°
OAHCAIH1H2120.0°120.0°
OAHCAIH1H3120.0°120.1°
OAHCAIH2H3120.0°120.1°
OAHCAECAFCAD178.9°179.7°
OAHCAECADCLL0.9°0.0°
OAHCAECAFCAA179.5°180.0°
OAHCAECADCAC179.4°180.0°
CAEOAHCAIH1180.0°60.1°
CAEOAHCAIH260.0°180.0°
CAEOAHCAIH360.0°60.0°
OAHCAECAFH40.5°0.1°
CAFCAECADCLL179.9°179.7°
CAECAFCAAH4180.0°180.0°
CAFCAECADCAC0.4°0.3°
CAECAFCAAOAG179.1°180.0°
CAECAFCAACAB0.2°0.0°
CAECADCLLCAC179.7°180.0°
CADCAECAFCAA0.6°0.3°
CAECADCACCAB0.2°0.0°
CAECADCACNAM178.2°180.0°
CADCAECAFH4179.5°179.8°
CLLCADCACCAB179.5°180.0°
CLLCADCACNAM1.5°0.0°
CAFCAAOAGCAB179.0°180.0°
CAFCAAOAGCAJ14.5°0.0°
CAFCAACABCAC0.3°0.3°
CAFCAACABCLK179.5°180.0°
CADCACCABCAA0.5°0.3°
CADCACCABNAM178.0°180.0°
CADCACCABCLK179.3°180.0°
CADCACNAMCAR106.4°89.9°
CADCACNAMCAN112.3°90.3°
OBHCBGNBECBF1.8°0.0°
OBHCBGNBECBI177.1°180.0°
OBHCBGNBECBD177.8°180.0°
OBHCBGCBICBJ2.7°0.0°
OBHCBGCBIH26177.4°180.0°
OAGCAACABCAC178.7°179.7°
OAGCAACABCLK1.5°0.0°
OAGCAACAFH40.9°0.0°
CAAOAGCAJH5180.0°180.0°
CAAOAGCAJH660.0°60.0°
CAAOAGCAJH760.0°60.0°
CABCAAOAGCAJ166.5°180.0°
CAACABCACCLK179.8°179.7°
CAACABCACNAM178.5°179.7°
CABCAACAFH4179.8°180.0°
OAWCARNAMCAC11.3°0.1°
OAWCARNAMNAQ180.0°179.9°
OAWCARNAMCAN149.9°179.7°
OAWCARNAQCBB28.9°0.0°
OAWCARNAQC4176.5°180.0°
OAGCAJH5H6120.0°120.1°
OAGCAJH5H7120.0°119.9°
OAGCAJH6H7120.0°120.0°
CABCACNAMCAR75.6°90.0°
CABCACNAMCAN65.7°89.7°
NAMCACCABCLK1.3°0.0°
CACNAMCARCAN138.6°179.8°
CACNAMCARNAQ168.7°180.0°
CACNAMCANC5174.7°180.0°
CACNAMCANH865.5°58.2°
CACNAMCANH954.9°58.1°
NBECBFCBBH20118.9°118.8°
NBECBFCBBH21118.8°118.8°
CBFNBECBGCBD176.0°180.0°
CBFNBECBGCBI175.3°180.0°
NBECBFCBBNAQ145.6°155.0°
NBECBFCBBCBC27.5°37.0°
CBFNBECBDCBC26.0°1.0°
NBECBFCBBH1989.1°81.0°
NBECBFH20H21123.3°122.3°
CBFNBECBDH24145.1°120.5°
CBFNBECBDH2593.1°118.4°
CBBCBFNBECBG177.6°155.9°
CBBCBFNBECBD1.1°24.1°
CBFCBBNAQCAR99.3°52.1°
CBFCBBNAQCBC117.3°112.2°
CBFCBBNAQH19125.2°124.0°
CBFCBBCBCH19116.3°118.1°
CBFCBBNAQC446.9°127.9°
CBFCBBCBCCBD44.1°35.5°
CBBCBFH20H21123.3°122.3°
CBFCBBCBCH22162.7°153.9°
CBFCBBCBCH2374.6°83.0°
NBECBGCBICBJ179.8°180.0°
CBGNBECBDCBC150.6°179.0°
CBGNBECBFH2063.5°85.3°
CBGNBECBFH2158.8°37.1°
CBGNBECBDH2431.6°59.5°
CBGNBECBDH2590.3°61.6°
NBECBGCBIH260.2°0.0°
CBICBGNBECBD0.7°0.0°
CBGCBICBJH26180.0°180.0°
CBGCBICBJCBK178.7°180.0°
CBGCBICBJH271.3°0.0°
NAMCARNAQCBB151.1°180.0°
NAMCARNAQC43.5°0.0°
CARNAMCANC543.7°0.2°
CARNAMCANH876.1°121.6°
CARNAMCANH9163.5°122.1°
CANNAMCARNAQ30.1°0.2°
NAMCANC5H8119.8°121.8°
NAMCANC5H9119.8°121.9°
NAMCANC5C427.7°0.0°
NAMCANC5C6150.1°180.0°
NAMCANH8H9120.6°116.5°
NBECBDCBCCBB42.6°22.2°
NBECBDCBCH24119.1°119.5°
NBECBDCBCH25119.1°119.5°
CBDNBECBFH20120.0°94.7°
CBDNBECBFH21117.7°142.9°
NBECBDCBCH22161.3°140.6°
NBECBDCBCH2376.0°96.2°
NBECBDH24H25122.6°121.2°
CARNAQCBBC4146.2°180.0°
CARNAQCBBCBC143.4°60.0°
CARNAQC4C520.0°0.3°
CARNAQC4N3164.6°180.0°
CARNAQCBBH1925.9°176.1°
CBICBJCBKH27180.0°180.0°
CBICBJCBKNBL115.0°125.0°
CBICBJCBKH28125.3°115.0°
CBICBJCBKH294.7°5.1°
CBJCBKNBLH28119.7°120.0°
CBJCBKNBLH29119.7°120.0°
CBJCBKNBLCBM160.1°66.1°
CBJCBKNBLCBN72.9°170.0°
CBKCBJCBIH261.3°0.0°
CBJCBKH28H29121.0°120.1°
NAQCBBCBCH19117.2°123.8°
NAQCBBCBCCBD170.6°153.6°
CBBNAQC4C5165.9°179.7°
CBBNAQC4N318.8°0.0°
NAQCBBCBFH2095.5°36.2°
NAQCBBCBFH2126.8°86.1°
NAQCBBCBCH2270.8°88.0°
NAQCBBCBCH2351.9°35.0°
CBCCBBNAQC470.4°120.0°
CBBCBCCBDH22118.7°118.4°
CBBCBCCBDH23118.6°118.5°
CBCCBBCBFH20146.4°81.8°
CBCCBBCBFH2191.3°155.8°
CBBCBCH22H23123.8°123.1°
CBBCBCCBDH24161.7°97.2°
CBBCBCCBDH2576.5°141.7°
CBKNBLCBMCBN129.4°123.9°
NBLCBKCBJH2765.0°55.0°
NBLCBKH28H29120.9°119.9°
CBKNBLCBNH31180.0°60.0°
CBKNBLCBNH3260.0°180.0°
CBKNBLCBNH3360.0°60.0°
CBKNBLCBMH34180.0°60.0°
CBKNBLCBMH3560.0°180.0°
CBKNBLCBMH3660.0°60.0°
NAQC4C5CAN2.5°0.3°
NAQC4C5N3175.6°179.7°
NAQC4C5C6179.8°179.7°
NAQC4N3C2179.3°179.8°
C4NAQCBBH19172.1°3.9°
CBDCBCCBBH1972.2°82.6°
CBDCBCH22H23123.9°123.3°
CBCCBDH24H25122.6°121.0°
CANC5C4C6177.8°180.0°
CANC5C4N3178.0°180.0°
CANC5C6N1179.9°180.0°
C5CANH8H9120.6°116.5°
CANC5C6H100.1°0.0°
C5C4N3C23.9°0.1°
C4C5C6N12.1°0.0°
C4C5CANH892.1°121.8°
C4C5CANH9147.5°121.8°
C4C5C6H10177.9°180.0°
N3C4C5C64.2°0.0°
C4N3C2N11.3°0.1°
C4N3C2NAX177.9°180.0°
CBMNBLCBKH2840.4°173.9°
CBMNBLCBKH2980.2°53.9°
CBMNBLCBNH3151.6°63.9°
CBMNBLCBNH3268.4°56.1°
CBMNBLCBNH33171.6°176.0°
NBLCBMH34H35120.0°120.0°
NBLCBMH34H36120.0°120.0°
NBLCBMH35H36120.0°120.0°
CBNNBLCBKH28167.4°50.0°
CBNNBLCBKH2946.8°70.0°
NBLCBNH31H32120.0°120.0°
NBLCBNH31H33120.0°120.0°
NBLCBNH32H33120.0°120.0°
CBNNBLCBMH3450.6°176.0°
CBNNBLCBMH35170.6°56.1°
CBNNBLCBMH3669.4°63.9°
C5C6N1H10180.0°179.9°
C5C6N1C20.5°0.1°
C6C5CANH890.1°58.2°
C6C5CANH930.4°58.2°
CBACAYNAXC281.1°85.0°
CBACAYNAXCAZ118.1°120.0°
CBACAYNAXH12121.2°120.0°
CBACAYCAZH12121.2°120.0°
CBACAYNAXH11158.3°95.0°
CAYCBAH13H14120.0°120.0°
CAYCBAH13H15120.0°120.0°
CAYCBAH14H15120.0°120.1°
CBACAYCAZH16180.0°180.0°
CBACAYCAZH1760.0°60.0°
CBACAYCAZH1860.0°60.0°
N3C2N1C61.0°0.1°
N3C2N1NAX179.2°179.9°
N3C2NAXCAY2.9°180.0°
N3C2NAXH11123.5°0.0°
C6N1C2NAX179.8°180.0°
N1C2NAXCAY177.9°0.1°
C2N1C6H10179.5°180.0°
N1C2NAXH1157.3°180.0°
C2NAXCAYH11120.6°180.0°
C2NAXCAYCAZ160.8°155.0°
C2NAXCAYH1240.2°35.0°
NAXCAYCAZH12121.5°120.0°
NAXCAYCBAH13180.0°180.0°
NAXCAYCBAH1460.0°60.1°
NAXCAYCBAH1560.0°60.0°
NAXCAYCAZH1662.7°60.0°
NAXCAYCAZH1757.3°180.0°
NAXCAYCAZH18177.3°60.0°
CAZCAYNAXH1140.2°25.0°
CAZCAYCBAH1362.8°60.0°
CAZCAYCBAH1457.2°179.9°
CAZCAYCBAH15177.2°60.0°
CAYCAZH16H17120.0°120.1°
CAYCAZH16H18120.0°120.0°
CAYCAZH17H18120.0°120.0°
H1CAIH2H3120.0°120.0°
H5CAJH6H7120.0°120.0°
H11NAXCAYH1280.5°145.0°
H12CAYCBAH1358.2°60.0°
H12CAYCBAH14178.2°60.0°
H12CAYCBAH1561.8°180.0°
H12CAYCAZH1658.8°60.0°
H12CAYCAZH17178.7°60.0°
H12CAYCAZH1861.2°180.0°
H13CBAH14H15119.9°119.9°
H16CAZH17H18120.0°120.0°
H19CBBCBFH2029.7°160.1°
H19CBBCBFH21152.0°37.8°
H19CBBCBCH2246.4°35.8°
H19CBBCBCH23169.1°158.9°
H22CBCCBDH2479.7°21.1°
H22CBCCBDH2542.2°99.9°
H23CBCCBDH2443.1°144.3°
H23CBCCBDH25164.9°23.3°
H26CBICBJH27178.7°180.0°
H27CBJCBKH2854.7°65.0°
H27CBJCBKH29175.3°175.0°
H31CBNH32H33120.0°120.0°
H34CBMH35H36120.0°120.0°

248636

PDB entries from 2026-02-04

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