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SummaryGeometryRelated PDB entries

YXU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C08N07sing1.37Å1.33ÅAromatic
C08C09doub1.34Å1.39ÅAromatic
N07C06sing1.38Å1.36ÅAromatic
C09C10sing1.46Å1.42ÅAromatic
C06C10doub1.41Å1.36ÅAromatic
C06C05sing1.39Å1.42ÅAromatic
C10N11sing1.33Å1.36ÅAromatic
C05C04doub1.38Å1.39ÅAromatic
N11C03doub1.32Å1.34ÅAromatic
C04C03sing1.39Å1.40ÅAromatic
C03O02sing1.36Å1.41Å
O02C01sing1.43Å1.40Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C04H4sing1.08Å1.08Å
C05H5sing1.08Å1.08Å
N07H6sing0.97Å1.00Å
C08H7sing1.08Å1.08Å
C09H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N07C08C09108.4°109.9°
C08N07C06110.1°109.7°
C08N07H6125.0°125.1°
N07C08H7125.8°125.0°
C08C09C10106.5°107.1°
C09C08H7125.8°125.0°
C08C09H8126.8°126.4°
N07C06C10108.6°107.3°
N07C06C05131.7°133.6°
C06N07H6125.0°125.1°
C09C10C06106.5°105.9°
C09C10N11133.2°133.6°
C10C09H8126.8°126.5°
C10C06C05119.7°119.1°
C06C10N11120.3°120.5°
C06C05C04118.6°118.4°
C06C05H5120.7°120.8°
C10N11C03121.7°121.3°
C05C04C03119.0°119.6°
C05C04H4120.5°120.2°
C04C05H5120.7°120.8°
N11C03C04120.7°121.1°
N11C03O02122.5°119.4°
C04C03O02116.7°119.5°
C03C04H4120.6°120.1°
C03O02C01119.3°117.0°
O02C01H1109.5°109.5°
O02C01H2109.5°109.5°
O02C01H3109.5°109.5°
H1C01H2109.4°109.5°
H1C01H3109.5°109.4°
H2C01H3109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N07C08C09H7180.0°179.8°
C08N07C06H6180.0°180.0°
N07C08C09C100.6°0.3°
C08N07C06C100.1°0.0°
C08N07C06C05179.3°179.9°
N07C08C09H8179.4°179.9°
C09C08N07C060.4°0.2°
C08C09C10H8180.0°179.6°
C08C09C10C060.6°0.3°
C08C09C10N11179.1°179.9°
C09C08N07H6179.6°179.8°
N07C06C10C090.3°0.2°
N07C06C10C05179.3°179.9°
N07C06C10N11179.1°180.0°
N07C06C05C04179.9°180.0°
N07C06C05H50.1°0.1°
C06N07C08H7179.6°179.9°
C09C10C06N11178.7°179.8°
C09C10C06C05179.0°179.7°
C09C10N11C03179.5°179.7°
C10C09C08H7179.4°179.8°
C10C06C05C041.0°0.1°
C06C10N11C032.2°0.1°
C10C06C05H5179.0°180.0°
C10C06N07H6179.9°180.0°
C06C10C09H8179.4°179.9°
C05C06C10N110.3°0.1°
C06C05C04H5180.0°179.9°
C06C05C04C030.4°0.0°
C06C05C04H4179.6°179.9°
C05C06N07H60.7°0.1°
C10N11C03C042.8°0.0°
C10N11C03O02179.3°179.9°
N11C10C09H80.9°0.3°
C05C04C03N111.4°0.0°
C05C04C03H4180.0°180.0°
C05C04C03O02178.2°180.0°
N11C03C04O02176.8°180.0°
N11C03O02C0119.4°0.1°
N11C03C04H4178.6°180.0°
C04C03O02C01163.9°180.0°
C03C04C05H5179.6°180.0°
C03O02C01H1180.0°60.0°
C03O02C01H260.0°60.1°
C03O02C01H360.0°180.0°
O02C03C04H41.8°0.1°
O02C01H1H2120.0°120.0°
O02C01H1H3120.0°120.0°
O02C01H2H3120.0°120.0°
H1C01H2H3120.0°119.9°
H4C04C05H50.4°0.0°
H6N07C08H70.4°0.1°
H7C08C09H80.6°0.2°

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PDB entries from 2024-08-07

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