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YXM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CBGCBHdoub1.38Å1.39ÅAromatic
CBGCBFsing1.38Å1.39ÅAromatic
CBHCBIsing1.38Å1.39ÅAromatic
CBFCBEdoub1.38Å1.39ÅAromatic
OAOCAMsing1.43Å1.43Å
CBICAYdoub1.38Å1.39ÅAromatic
CBECAYsing1.38Å1.39ÅAromatic
OAQCAPdoub1.21Å1.23Å
CAYPAVsing1.87Å1.68Å
CAMCAJsing1.53Å1.53Å
CAPNANsing1.35Å1.34Å
CAPCARsing1.51Å1.53Å
CAJNANsing1.47Å1.47Å
CAJCAHsing1.53Å1.53Å
CBJCBKdoub1.38Å1.39ÅAromatic
CBJCAXsing1.38Å1.39ÅAromatic
CASCARsing1.53Å1.53Å
CASCATsing1.53Å1.53Å
CACCADdoub1.38Å1.39ÅAromatic
CACCABsing1.38Å1.39ÅAromatic
CBKCBLsing1.38Å1.39ÅAromatic
PAVCAUsing1.87Å1.80Å
PAVCAXsing1.87Å1.70Å
PAVCAWsing1.87Å1.73Å
CATCAUsing1.53Å1.54Å
CADCAEsing1.38Å1.39ÅAromatic
CAHCABsing1.51Å1.40Å
CAHOAIsing1.43Å1.43Å
CAXCBNdoub1.38Å1.39ÅAromatic
CABCAAdoub1.38Å1.39ÅAromatic
OALNAGsing1.22Å1.39Å
CAWCAZdoub1.38Å1.39ÅAromatic
CAWCBDsing1.38Å1.39ÅAromatic
CAENAGsing1.48Å1.33Å
CAECAFdoub1.38Å1.39ÅAromatic
CAZCBAsing1.38Å1.39ÅAromatic
CBLCBMdoub1.38Å1.39ÅAromatic
CBDCBCdoub1.38Å1.39ÅAromatic
NAGOAKdoub1.22Å1.47Å
CAACAFsing1.38Å1.39ÅAromatic
CBNCBMsing1.38Å1.39ÅAromatic
CBACBBdoub1.38Å1.39ÅAromatic
CBCCBBsing1.38Å1.39ÅAromatic
CAAH1sing1.08Å1.08Å
CACH2sing1.08Å1.08Å
CADH3sing1.08Å1.08Å
CAFH4sing1.08Å1.08Å
CAHH5sing1.09Å1.10Å
CAJH6sing1.09Å1.10Å
CAMH7sing1.09Å1.10Å
CAMH8sing1.09Å1.10Å
CARH9sing1.09Å1.10Å
CARH10sing1.09Å1.10Å
CASH11sing1.09Å1.10Å
CASH12sing1.09Å1.10Å
CATH13sing1.09Å1.10Å
CATH14sing1.09Å1.10Å
CAUH15sing1.09Å1.10Å
CAUH16sing1.09Å1.10Å
CAZH17sing1.08Å1.08Å
CBAH18sing1.08Å1.08Å
CBBH19sing1.08Å1.08Å
CBCH20sing1.08Å1.08Å
CBDH21sing1.08Å1.08Å
CBEH22sing1.08Å1.08Å
CBFH23sing1.08Å1.08Å
CBGH24sing1.08Å1.08Å
CBHH25sing1.08Å1.08Å
CBIH26sing1.08Å1.08Å
CBJH27sing1.08Å1.08Å
CBKH28sing1.08Å1.08Å
CBLH29sing1.08Å1.08Å
CBMH30sing1.08Å1.08Å
CBNH31sing1.08Å1.08Å
NANH32sing0.97Å1.00Å
OAIH33sing0.97Å0.95Å
OAOH34sing0.97Å0.95Å
PAVH36sing1.47Å93.85Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CBHCBGCBF120.0°120.0°
CBGCBHCBI119.9°120.0°
CBHCBGH24120.0°120.0°
CBGCBHH25120.1°120.0°
CBGCBFCBE120.2°120.0°
CBGCBFH23119.9°120.0°
CBFCBGH24120.0°120.0°
CBHCBICAY120.3°119.9°
CBICBHH25120.1°120.0°
CBHCBIH26119.8°120.0°
CBFCBECAY119.9°120.0°
CBFCBEH22120.0°119.9°
CBECBFH23119.9°120.1°
OAOCAMCAJ109.9°109.5°
OAOCAMH7109.4°109.5°
OAOCAMH8109.4°109.5°
CAMOAOH34109.5°114.0°
CBICAYCBE119.7°120.0°
CBICAYPAV121.2°120.0°
CAYCBIH26119.9°120.0°
CBECAYPAV119.2°120.0°
CAYCBEH22120.0°120.0°
OAQCAPNAN123.8°120.0°
OAQCAPCAR122.0°120.0°
CAYPAVCAU101.2°90.0°
CAYPAVCAX117.4°120.0°
CAYPAVCAW114.5°120.0°
CAYPAVH3686.7°90.0°
CAMCAJNAN108.1°109.5°
CAMCAJCAH105.9°109.4°
CAMCAJH6109.8°109.5°
CAJCAMH7109.4°109.4°
CAJCAMH8109.4°109.4°
NANCAPCAR114.2°120.0°
CAPNANCAJ122.7°120.0°
CAPNANH32118.7°120.0°
CAPCARCAS114.8°109.5°
CAPCARH9108.1°109.5°
CAPCARH10108.1°109.5°
NANCAJCAH112.5°109.5°
NANCAJH6110.6°109.5°
CAJNANH32118.7°120.0°
CAJCAHCAB114.1°109.5°
CAJCAHOAI109.8°109.5°
CAJCAHH5106.0°109.5°
CAHCAJH6109.8°109.5°
CBKCBJCAX120.4°120.0°
CBJCBKCBL120.0°120.0°
CBKCBJH27119.8°120.0°
CBJCBKH28120.0°120.0°
CBJCAXPAV120.7°120.0°
CBJCAXCBN119.3°120.0°
CAXCBJH27119.8°120.0°
CARCASCAT106.6°109.5°
CASCARH9108.1°109.5°
CASCARH10108.1°109.4°
CARCASH11110.2°109.5°
CARCASH12110.2°109.4°
CASCATCAU113.2°109.4°
CATCASH11110.2°109.5°
CATCASH12110.2°109.5°
CASCATH13108.5°109.5°
CASCATH14108.5°109.4°
CADCACCAB120.5°120.0°
CACCADCAE119.8°120.0°
CADCACH2119.7°120.0°
CACCADH3120.1°120.0°
CACCABCAH119.0°120.0°
CACCABCAA119.5°120.0°
CABCACH2119.7°120.0°
CBKCBLCBM120.0°120.0°
CBLCBKH28120.0°119.9°
CBKCBLH29120.0°120.0°
CAUPAVCAX106.9°90.0°
CAUPAVCAW99.6°90.0°
PAVCAUCAT110.0°109.4°
PAVCAUH15109.3°109.5°
PAVCAUH16109.4°109.5°
CAUPAVH36135.3°180.0°
CAXPAVCAW114.2°120.0°
PAVCAXCBN120.0°120.0°
CAXPAVH36107.9°90.0°
PAVCAWCAZ119.7°120.0°
PAVCAWCBD120.3°120.0°
CAWPAVH3639.9°90.0°
CAUCATH13108.5°109.5°
CAUCATH14108.5°109.5°
CATCAUH15109.4°109.5°
CATCAUH16109.3°109.5°
CADCAENAG119.6°120.0°
CADCAECAF120.0°120.0°
CAECADH3120.1°120.0°
CABCAHOAI111.8°109.5°
CAHCABCAA121.4°120.0°
CABCAHH5107.5°109.4°
OAICAHH5107.1°109.5°
CAHOAIH33109.5°113.9°
CAXCBNCBM120.4°120.0°
CAXCBNH31119.8°120.0°
CABCAACAF120.1°120.0°
CABCAAH1119.9°120.0°
OALNAGCAE118.5°120.0°
OALNAGOAK122.2°120.0°
CAZCAWCBD120.0°119.9°
CAWCAZCBA119.9°120.0°
CAWCAZH17120.0°120.0°
CAWCBDCBC120.3°120.0°
CAWCBDH21119.9°120.0°
NAGCAECAF120.5°120.0°
CAENAGOAK119.3°120.0°
CAECAFCAA120.0°120.0°
CAECAFH4120.0°120.0°
CAZCBACBB120.0°120.0°
CBACAZH17120.1°120.0°
CAZCBAH18120.0°120.0°
CBLCBMCBN119.9°120.0°
CBMCBLH29120.0°120.0°
CBLCBMH30120.0°120.0°
CBDCBCCBB119.8°120.0°
CBDCBCH20120.2°120.0°
CBCCBDH21119.9°120.0°
CAFCAAH1119.9°120.0°
CAACAFH4120.0°120.0°
CBNCBMH30120.1°120.0°
CBMCBNH31119.8°120.0°
CBACBBCBC120.1°120.0°
CBBCBAH18120.0°120.0°
CBACBBH19119.9°120.0°
CBCCBBH19119.9°120.0°
CBBCBCH20120.1°120.0°
H7CAMH8109.5°109.5°
H9CARH10109.5°109.5°
H11CASH12109.5°109.5°
H13CATH14109.5°109.5°
H15CAUH16109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CBHCBGCBFH24180.0°179.7°
CBGCBHCBIH25180.0°179.7°
CBHCBGCBFCBE0.0°0.0°
CBGCBHCBICAY0.3°0.6°
CBHCBGCBFH23180.0°180.0°
CBGCBHCBIH26179.7°180.0°
CBFCBGCBHCBI0.2°0.3°
CBGCBFCBEH23180.0°180.0°
CBGCBFCBECAY0.1°0.0°
CBGCBFCBEH22180.0°180.0°
CBFCBGCBHH25179.8°180.0°
CBHCBICAYH26180.0°179.5°
CBHCBICAYCBE0.2°0.6°
CBHCBICAYPAV179.5°179.7°
CBICBHCBGH24179.8°180.0°
CBFCBECAYCBI0.0°0.3°
CBFCBECAYH22180.0°179.9°
CBFCBECAYPAV179.7°180.0°
CBECBFCBGH24179.9°179.7°
OAOCAMCAJH7120.1°120.0°
OAOCAMCAJH8120.1°120.0°
OAOCAMCAJNAN86.0°65.0°
OAOCAMCAJCAH153.2°55.0°
OAOCAMCAJH634.7°175.0°
OAOCAMH7H8119.8°120.1°
CBICAYCBEPAV179.7°179.7°
CBICAYPAVCAU158.6°0.3°
CBICAYPAVCAX42.7°90.3°
CBICAYPAVCAW95.3°89.7°
CBICAYCBEH22180.0°179.8°
CAYCBICBHH25179.8°179.7°
CBICAYPAVH3665.8°179.7°
CBECAYPAVCAU21.1°180.0°
CBECAYPAVCAX137.0°90.0°
CBECAYPAVCAW85.0°90.0°
CAYCBECBFH23179.9°180.0°
CBECAYCBIH26179.8°180.0°
CBECAYPAVH36114.5°0.0°
OAQCAPNANCAR178.6°180.0°
OAQCAPNANCAJ0.6°0.0°
OAQCAPCARCAS28.7°0.0°
OAQCAPCARH992.1°120.0°
OAQCAPCARH10149.5°120.0°
OAQCAPNANH32179.4°180.0°
CAYPAVCAXCBJ11.7°37.3°
CAYPAVCAUCAX123.3°120.0°
CAYPAVCAUCAW117.5°120.0°
CAYPAVCAUH3696.7°118.9°
CAYPAVCAXCAW138.1°180.0°
CAYPAVCAXH3695.7°90.0°
CAYPAVCAWH3650.0°90.0°
CAYPAVCAUCAT85.1°168.4°
CAYPAVCAXCBN168.9°143.0°
CAYPAVCAWCAZ81.2°175.9°
CAYPAVCAWCBD98.5°4.4°
CAYPAVCAUH1535.0°71.6°
CAYPAVCAUH16154.9°48.4°
PAVCAYCBEH220.4°0.0°
PAVCAYCBIH260.5°0.3°
CAMCAJNANCAP118.5°85.0°
CAMCAJNANCAH116.6°120.0°
CAMCAJNANH6120.2°120.0°
CAMCAJCAHH6118.5°120.0°
CAMCAJCAHCAB167.7°175.0°
CAMCAJCAHOAI65.8°55.0°
CAMCAJCAHH549.6°65.0°
CAJCAMH7H8119.8°119.9°
CAMCAJNANH3261.5°95.0°
CAJCAMOAOH34180.0°180.0°
CAPNANCAJH32180.0°180.0°
CAPNANCAJCAH124.8°155.0°
NANCAPCARCAS152.7°180.0°
CAPNANCAJH61.7°35.0°
NANCAPCARH986.5°60.0°
NANCAPCARH1031.9°60.0°
CARCAPNANCAJ177.9°180.0°
CAPCARCASH9120.8°120.0°
CAPCARCASH10120.8°120.0°
CAPCARCASCAT167.2°180.0°
CAPCARH9H10117.6°120.0°
CAPCARCASH1173.3°60.0°
CAPCARCASH1247.7°60.0°
CARCAPNANH322.1°0.0°
NANCAJCAHH6123.6°120.1°
NANCAJCAHCAB74.3°55.0°
NANCAJCAHOAI52.1°65.0°
NANCAJCAHH5167.5°175.0°
NANCAJCAMH734.1°55.0°
NANCAJCAMH8154.0°175.0°
CAJCAHCABCAC86.2°85.0°
CAJCAHCABOAI125.4°120.0°
CAJCAHCABH5117.3°120.0°
CAJCAHOAIH5114.7°120.0°
CAJCAHCABCAA96.0°94.9°
CAHCAJCAMH786.7°175.0°
CAHCAJCAMH833.2°65.0°
CAHCAJNANH3255.2°25.0°
CAJCAHOAIH33180.0°60.0°
CBKCBJCAXH27180.0°180.0°
CBJCBKCBLH28180.0°180.0°
CBKCBJCAXPAV179.5°179.7°
CBKCBJCAXCBN0.2°0.0°
CBJCBKCBLCBM0.2°0.0°
CBJCBKCBLH29179.8°179.9°
CAXCBJCBKCBL0.1°0.0°
CBJCAXPAVCAU101.0°52.7°
CBJCAXPAVCBN179.3°179.7°
CBJCAXPAVCAW149.8°142.7°
CBJCAXCBNCBM0.3°0.0°
CAXCBJCBKH28179.9°180.0°
CBJCAXCBNH31179.7°180.0°
CBJCAXPAVH36107.5°127.3°
CARCASCATH11119.5°120.0°
CARCASCATH12119.5°120.0°
CARCASCATCAU166.0°180.0°
CASCARH9H10117.6°119.9°
CARCASH11H12121.3°119.9°
CARCASCATH1373.5°60.0°
CARCASCATH1445.4°60.0°
CASCATCAUPAV149.5°174.5°
CASCATCAUH13120.6°120.0°
CASCATCAUH14120.6°119.9°
CATCASCARH946.4°60.0°
CATCASCARH1072.0°60.0°
CATCASH11H12121.3°120.0°
CASCATH13H14118.3°120.0°
CASCATCAUH1529.4°54.6°
CASCATCAUH1690.4°65.5°
CADCACCABH2180.0°180.0°
CACCADCAEH3180.0°180.0°
CADCACCABCAH178.5°180.0°
CADCACCABCAA0.7°0.1°
CACCADCAENAG179.8°180.0°
CACCADCAECAF0.4°0.1°
CABCACCADCAE0.1°0.0°
CACCABCAHCAA177.8°179.9°
CACCABCAHOAI148.4°35.0°
CACCABCAACAF0.9°0.1°
CACCABCAAH1179.1°179.7°
CABCACCADH3179.9°179.9°
CACCABCAHH531.1°155.0°
CBKCBLCBMH29180.0°180.0°
CBKCBLCBMCBN0.3°0.1°
CBLCBKCBJH27179.9°180.0°
CBKCBLCBMH30179.6°180.0°
CAUPAVCAXCAW109.2°90.0°
CAUPAVCAXH36151.6°180.0°
CAUPAVCAWH36157.1°180.0°
PAVCAUCATH15120.1°119.9°
PAVCAUCATH16120.1°120.0°
CAUPAVCAXCBN78.4°127.0°
CAUPAVCAWCAZ25.8°94.1°
CAUPAVCAWCBD154.4°85.6°
PAVCAUCATH1328.9°65.4°
PAVCAUCATH1489.9°54.6°
PAVCAUH15H16119.8°120.0°
CAXPAVCAWH3689.3°90.0°
CAXPAVCAUCAT38.3°48.4°
CAXPAVCAWCAZ139.4°4.2°
CAXPAVCAWCBD40.8°175.6°
PAVCAXCBNCBM179.6°179.6°
CAXPAVCAUH15158.3°168.4°
CAXPAVCAUH1681.8°71.6°
PAVCAXCBJH270.5°0.3°
PAVCAXCBNH310.4°0.3°
CAWPAVCAUCAT157.4°71.6°
CAWPAVCAXCBN30.8°37.0°
PAVCAWCAZCBD179.8°179.7°
PAVCAWCAZCBA179.8°179.8°
PAVCAWCBDCBC179.9°179.7°
CAWPAVCAUH1582.5°48.4°
CAWPAVCAUH1637.3°168.4°
PAVCAWCAZH170.2°0.3°
PAVCAWCBDH210.1°0.3°
CAUCATCASH1146.4°60.0°
CAUCATCASH1274.5°60.0°
CAUCATH13H14118.3°120.1°
CATCAUH15H16119.8°120.1°
CATCAUPAVH36178.2°49.4°
CADCAENAGOAL16.9°180.0°
CADCAENAGCAF179.8°179.8°
CADCAENAGOAK162.4°0.0°
CADCAECAFCAA0.2°0.1°
CAECADCACH2179.9°180.0°
CADCAECAFH4179.8°179.8°
CABCAHOAIH5117.6°120.0°
CAHCABCAACAF178.6°180.0°
CAHCABCAAH11.4°0.4°
CAHCABCACH21.5°0.0°
CABCAHCAJH649.3°65.0°
CABCAHOAIH3352.3°60.0°
OAICAHCABCAA29.3°145.0°
OAICAHCAJH6175.7°175.0°
CAXCBNCBMCBL0.4°0.1°
CAXCBNCBMH31180.0°180.0°
CBNCAXCBJH27179.8°180.0°
CAXCBNCBMH30179.6°180.0°
CBNCAXPAVH3673.2°53.0°
CABCAACAFCAE0.4°0.0°
CABCAACAFH1180.0°179.7°
CAACABCACH2179.3°179.9°
CABCAACAFH4179.6°179.7°
CAACABCAHH5146.7°25.0°
OALNAGCAEOAK179.4°179.9°
OALNAGCAECAF163.2°0.2°
CAWCAZCBAH17180.0°179.9°
CAZCAWCBDCBC0.1°0.0°
CAWCAZCBACBB0.0°0.1°
CAWCAZCBAH18180.0°180.0°
CAZCAWCBDH21179.9°180.0°
CAZCAWPAVH36131.3°85.8°
CBDCAWCAZCBA0.0°0.1°
CAWCBDCBCH21180.0°180.0°
CAWCBDCBCCBB0.2°0.0°
CBDCAWCAZH17180.0°180.0°
CAWCBDCBCH20179.8°179.9°
CBDCAWPAVH3648.5°94.4°
NAGCAECAFCAA179.9°180.0°
NAGCAECADH30.2°0.0°
NAGCAECAFH40.0°0.4°
CAFCAENAGOAK17.4°179.9°
CAECAFCAAH4180.0°179.6°
CAECAFCAAH1179.6°179.6°
CAFCAECADH3179.6°179.8°
CAZCBACBBH18180.0°180.0°
CAZCBACBBCBC0.1°0.0°
CAZCBACBBH19179.9°179.9°
CBLCBMCBNH30180.0°179.9°
CBMCBLCBKH28179.8°180.0°
CBLCBMCBNH31179.6°180.0°
CBDCBCCBBCBA0.2°0.0°
CBDCBCCBBH20180.0°180.0°
CBDCBCCBBH19179.8°180.0°
CBNCBMCBLH29179.7°179.9°
CBACBBCBCH19180.0°180.0°
CBBCBACAZH17180.0°180.0°
CBACBBCBCH20179.8°180.0°
CBCCBBCBAH18179.9°180.0°
CBBCBCCBDH21179.8°179.9°
H1CAACAFH40.4°0.0°
H2CACCADH30.1°0.0°
H5CAHCAJH668.9°54.9°
H5CAHOAIH3365.3°180.0°
H6CAJCAMH7154.8°65.0°
H6CAJCAMH885.4°55.0°
H6CAJNANH32178.3°145.0°
H7CAMOAOH3459.9°60.1°
H8CAMOAOH3459.9°60.0°
H9CARCASH11165.9°180.0°
H9CARCASH1273.1°60.0°
H10CARCASH1147.5°60.0°
H10CARCASH12168.5°180.0°
H11CASCATH13167.0°180.0°
H11CASCATH1474.1°60.0°
H12CASCATH1346.1°60.0°
H12CASCATH14164.9°180.0°
H13CATCAUH1591.1°174.6°
H13CATCAUH16149.0°54.5°
H14CATCAUH15150.0°65.3°
H14CATCAUH1630.1°174.6°
H15CAUPAVH3661.7°169.4°
H16CAUPAVH3658.1°70.5°
H17CAZCBAH180.0°0.0°
H18CBACBBH190.1°0.0°
H19CBBCBCH200.2°0.0°
H20CBCCBDH210.2°0.1°
H22CBECBFH230.0°0.0°
H23CBFCBGH240.1°0.3°
H24CBGCBHH250.2°0.3°
H25CBHCBIH260.2°0.3°
H27CBJCBKH280.2°0.0°
H28CBKCBLH290.2°0.1°
H29CBLCBMH300.4°0.0°
H30CBMCBNH310.4°0.0°

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PDB entries from 2026-02-18

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