YX0

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.51Å
C1	O1	sing	1.43Å	1.43Å
C1	O5	sing	1.43Å	1.44Å
C2	C3	sing	1.53Å	1.51Å
C2	O2	sing	1.43Å	1.45Å
C3	C4	sing	1.53Å	1.51Å
C3	O3	sing	1.43Å	1.44Å
C4	C5	sing	1.53Å	1.54Å
C4	O4	sing	1.43Å	1.45Å
C5	C6	sing	1.53Å	1.53Å
C5	O5	sing	1.43Å	1.42Å
O1	C1'	sing	1.43Å	1.38Å
O5'	C5'	sing	1.36Å	1.23Å
C5'	C6'	sing	1.51Å	1.50Å
C5'	C4'	doub	1.35Å	1.50Å
C4'	C3'	sing	1.47Å	1.40Å
C4'	N	sing	1.40Å	1.36Å
C3'	C2'	doub	1.33Å	1.38Å
C2'	C1'	sing	1.51Å	1.51Å
C2'	O	sing	1.35Å	1.34Å
O	N	sing	1.42Å	1.43Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
C6	H63	sing	1.09Å	1.10Å
C1'	H1'1	sing	1.09Å	1.10Å
C1'	H1'2	sing	1.09Å	1.10Å
O5'	H5'	sing	0.97Å	0.95Å
C6'	H6'1	sing	1.09Å	1.10Å
C6'	H6'2	sing	1.09Å	1.10Å
C6'	H6'3	sing	1.09Å	1.10Å
C3'	H3'	sing	1.08Å	1.08Å
N	H	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	108.2°	109.5°
C2	C1	O5	110.5°	109.4°
C1	C2	C3	109.2°	109.2°
C1	C2	O2	112.9°	109.5°
C2	C1	H1	109.8°	109.5°
C1	C2	H2	107.0°	109.5°
O1	C1	O5	109.9°	109.5°
C1	O1	C1'	114.3°	114.0°
O1	C1	H1	110.4°	109.5°
C1	O5	C5	114.1°	114.1°
O5	C1	H1	108.1°	109.5°
C3	C2	O2	108.5°	109.5°
C2	C3	C4	112.0°	109.0°
C2	C3	O3	107.4°	109.6°
C3	C2	H2	111.5°	109.5°
C2	C3	H3	109.1°	109.5°
O2	C2	H2	107.7°	109.6°
C2	O2	HO2	109.5°	114.0°
C4	C3	O3	109.4°	109.5°
C3	C4	C5	109.3°	109.1°
C3	C4	O4	105.2°	109.5°
C4	C3	H3	107.2°	109.5°
C3	C4	H4	112.8°	109.5°
O3	C3	H3	111.8°	109.6°
C3	O3	HO3	109.5°	114.0°
C5	C4	O4	110.6°	109.6°
C4	C5	C6	111.4°	109.5°
C4	C5	O5	111.0°	109.4°
C5	C4	H4	107.6°	109.5°
C4	C5	H5	106.7°	109.5°
O4	C4	H4	111.5°	109.6°
C4	O4	HO4	109.5°	114.0°
C6	C5	O5	108.3°	109.5°
C6	C5	H5	109.5°	109.5°
C5	C6	H61	109.5°	109.5°
C5	C6	H62	109.5°	109.5°
C5	C6	H63	109.5°	109.5°
O5	C5	H5	109.9°	109.5°
O1	C1'	C2'	110.8°	109.5°
O1	C1'	H1'1	109.0°	109.5°
O1	C1'	H1'2	108.7°	109.4°
O5'	C5'	C6'	123.0°	120.0°
O5'	C5'	C4'	121.5°	120.0°
C5'	O5'	H5'	109.5°	114.0°
C6'	C5'	C4'	115.4°	120.0°
C5'	C6'	H6'1	109.5°	109.4°
C5'	C6'	H6'2	109.4°	109.4°
C5'	C6'	H6'3	109.4°	109.5°
C5'	C4'	C3'	126.9°	127.2°
C5'	C4'	N	123.4°	127.2°
C3'	C4'	N	109.7°	105.7°
C4'	C3'	C2'	105.4°	107.6°
C4'	C3'	H3'	127.3°	126.2°
C4'	N	O	106.4°	106.6°
C4'	N	H	110.5°	126.7°
C3'	C2'	C1'	127.0°	124.7°
C3'	C2'	O	111.2°	110.5°
C2'	C3'	H3'	127.3°	126.2°
C1'	C2'	O	121.7°	124.8°
C2'	C1'	H1'1	109.1°	109.5°
C2'	C1'	H1'2	108.7°	109.5°
C2'	O	N	107.3°	109.6°
O	N	H	110.5°	126.7°
H61	C6	H62	109.5°	109.4°
H61	C6	H63	109.4°	109.5°
H62	C6	H63	109.5°	109.4°
H1'1	C1'	H1'2	110.5°	109.5°
H6'1	C6'	H6'2	109.5°	109.4°
H6'1	C6'	H6'3	109.5°	109.5°
H6'2	C6'	H6'3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	O5	120.8°	119.9°
C2	C1	O1	H1	120.1°	120.0°
C2	C1	O5	H1	120.1°	120.0°
C1	C2	C3	O2	123.4°	119.9°
C1	C2	C3	H2	118.1°	119.9°
C1	C2	O2	H2	117.9°	120.2°
C1	C2	C3	C4	55.1°	57.0°
C1	C2	C3	O3	175.2°	176.8°
C2	C1	O5	C5	59.7°	61.2°
C2	C1	O1	C1'	164.2°	175.0°
C1	C2	C3	H3	63.5°	62.9°
C1	C2	O2	HO2	121.3°	60.0°
O1	C1	O5	H1	120.5°	120.1°
O1	C1	C2	C3	64.3°	62.4°
O1	C1	C2	O2	56.4°	57.5°
O1	C1	O5	C5	59.7°	58.8°
C1	O1	C1'	C2'	69.8°	180.0°
O1	C1	C2	H2	174.8°	177.7°
C1	O1	C1'	H1'1	50.2°	60.0°
C1	O1	C1'	H1'2	170.7°	60.0°
O5	C1	C2	C3	56.0°	57.6°
O5	C1	C2	O2	176.8°	177.5°
C1	O5	C5	C4	58.2°	61.2°
C1	O5	C5	C6	179.2°	178.8°
O5	C1	O1	C1'	75.1°	65.1°
O5	C1	C2	H2	64.8°	62.3°
C1	O5	C5	H5	59.6°	58.8°
C3	C2	O2	H2	120.9°	120.1°
C2	C3	C4	O3	119.0°	119.9°
C2	C3	C4	H3	119.7°	119.8°
C2	C3	O3	H3	119.7°	120.3°
C2	C3	C4	C5	53.5°	57.0°
C2	C3	C4	O4	65.3°	63.0°
C3	C2	C1	H1	175.2°	177.6°
C3	C2	O2	HO2	117.5°	179.7°
C2	C3	C4	H4	173.0°	176.8°
C2	C3	O3	HO3	40.1°	60.0°
O2	C2	C3	C4	178.5°	176.9°
O2	C2	C3	O3	61.4°	63.3°
O2	C2	C1	H1	64.1°	62.5°
O2	C2	C3	H3	60.0°	57.1°
C4	C3	O3	H3	118.5°	120.2°
C3	C4	C5	O4	115.3°	119.9°
C3	C4	C5	H4	122.7°	119.8°
C3	C4	O4	H4	122.5°	120.1°
C3	C4	C5	C6	174.4°	177.6°
C3	C4	C5	O5	53.6°	57.7°
C4	C3	C2	H2	63.0°	63.0°
C4	C3	O3	HO3	81.7°	179.6°
C3	C4	C5	H5	66.2°	62.4°
C3	C4	O4	HO4	150.3°	180.0°
O3	C3	C4	C5	172.4°	176.9°
O3	C3	C4	O4	53.6°	56.9°
O3	C3	C2	H2	57.1°	56.9°
O3	C3	C4	H4	68.0°	63.3°
C5	C4	O4	H4	119.6°	120.2°
C4	C5	C6	O5	122.4°	119.9°
C4	C5	C6	H5	117.8°	120.1°
C4	C5	O5	H5	117.8°	120.0°
C5	C4	C3	H3	66.2°	62.8°
C5	C4	O4	HO4	91.8°	60.4°
C4	C5	C6	H61	117.8°	60.0°
C4	C5	C6	H62	122.2°	180.0°
C4	C5	C6	H63	2.2°	60.0°
O4	C4	C5	C6	59.0°	57.7°
O4	C4	C5	O5	61.8°	62.3°
O4	C4	C3	H3	175.0°	177.2°
O4	C4	C5	H5	178.5°	177.7°
C6	C5	O5	H5	119.6°	120.0°
C6	C5	C4	H4	62.9°	62.6°
C5	C6	H61	H62	120.0°	120.0°
C5	C6	H61	H63	120.0°	120.0°
C5	C6	H62	H63	120.0°	120.0°
C5	O5	C1	H1	179.8°	178.9°
O5	C5	C4	H4	176.3°	177.5°
O5	C5	C6	H61	119.8°	180.0°
O5	C5	C6	H62	0.2°	60.1°
O5	C5	C6	H63	120.2°	59.9°
O1	C1'	C2'	C3'	101.5°	115.0°
O1	C1'	C2'	H1'1	120.0°	120.0°
O1	C1'	C2'	H1'2	119.4°	120.0°
O1	C1'	C2'	O	75.1°	65.0°
C1'	O1	C1	H1	44.1°	55.0°
O1	C1'	H1'1	H1'2	119.4°	119.9°
O5'	C5'	C6'	C4'	178.4°	180.0°
O5'	C5'	C4'	C3'	7.8°	0.0°
O5'	C5'	C4'	N	171.3°	179.7°
O5'	C5'	C6'	H6'1	58.8°	90.0°
O5'	C5'	C6'	H6'2	61.2°	150.1°
O5'	C5'	C6'	H6'3	178.8°	30.1°
C6'	C5'	C4'	C3'	173.8°	180.0°
C6'	C5'	C4'	N	7.2°	0.3°
C6'	C5'	O5'	H5'	115.5°	180.0°
C5'	C6'	H6'1	H6'2	120.0°	119.9°
C5'	C6'	H6'1	H6'3	120.0°	120.0°
C5'	C6'	H6'2	H6'3	120.0°	120.0°
C5'	C4'	C3'	N	179.2°	179.7°
C5'	C4'	C3'	C2'	178.8°	180.0°
C5'	C4'	N	O	179.4°	179.9°
C4'	C5'	O5'	H5'	62.8°	0.1°
C4'	C5'	C6'	H6'1	122.8°	90.0°
C4'	C5'	C6'	H6'2	117.2°	30.0°
C4'	C5'	C6'	H6'3	2.8°	150.0°
C5'	C4'	C3'	H3'	1.2°	0.0°
C5'	C4'	N	H	60.6°	0.1°
C4'	C3'	C2'	H3'	180.0°	180.0°
C4'	C3'	C2'	C1'	177.8°	180.0°
C4'	C3'	C2'	O	0.9°	0.0°
C3'	C4'	N	O	0.2°	0.4°
C3'	C4'	N	H	120.2°	179.8°
N	C4'	C3'	C2'	0.4°	0.3°
C4'	N	O	C2'	0.8°	0.4°
C4'	N	O	H	120.0°	179.8°
N	C4'	C3'	H3'	179.6°	179.7°
C3'	C2'	C1'	O	176.6°	180.0°
C3'	C2'	O	N	1.1°	0.2°
C3'	C2'	C1'	H1'1	18.5°	5.0°
C3'	C2'	C1'	H1'2	139.1°	125.0°
C1'	C2'	O	N	178.1°	179.7°
C2'	C1'	H1'1	H1'2	119.5°	120.0°
C1'	C2'	C3'	H3'	2.2°	0.0°
O	C2'	C1'	H1'1	164.9°	175.0°
O	C2'	C1'	H1'2	44.3°	55.0°
O	C2'	C3'	H3'	179.1°	180.0°
C2'	O	N	H	120.7°	179.8°
H1	C1	C2	H2	54.3°	57.7°
H2	C2	C3	H3	178.5°	177.2°
H2	C2	O2	HO2	3.4°	60.2°
H3	C3	C4	H4	53.3°	57.0°
H3	C3	O3	HO3	159.8°	60.2°
H4	C4	C5	H5	56.5°	57.4°
H4	C4	O4	HO4	27.8°	59.9°
H5	C5	C6	H61	0.0°	60.0°
H5	C5	C6	H62	120.0°	60.0°
H5	C5	C6	H63	120.0°	179.9°
H61	C6	H62	H63	120.0°	120.0°
H6'1	C6'	H6'2	H6'3	120.1°	120.1°

Definition date:	2008-05-22
Last modified:	2020-07-17
Release status:	REL
Processing site:	EBI
Derived from:	2VUC